代表性合作文章

目前，希望组一共发表高水平SCI论文近500篇，总影响因子4000+，包含Cell、Nature、Science、Nature Genetics、Molecular Plant等期刊。
物种种类1种类2主要研究内容发表期刊影响因子发表年份第一单位主要技术标题
Wiedemann-Steiner综合征KMT2A基因BMC Pediatrics22025.07郑州大学附属儿童医院内分泌遗传代谢科全外显子测序(WES)、nanopore Diagnosis and recombinant human growth hormone treatment of Wiedemann-Steiner syndrome: discovery of novel KMT2A variants and review of existing literature
沙棘植物胡颓子科沙棘属基因组、比较基因组GigaScience3.92025.07中国科学院热带植物资源可持续利用重点实验室nanopore 、PacBio HiFi、Hi-C、 RNA-Seq、WGSThe genome of Hippophae salicifolia provides new insights into the sexual differentiation of sea buckthorn
伪角蜡蚧动物同翅目蜡蚧科蜡蚧属基因组Scientific Data5.82025.07河北省动物多样性重点实验室nanopore 、Hi-C、 RNA-Seq、WGSChromosome-level genome assembly of Ceroplastes pseudoceriferus Green, 1935 (Hemiptera: Coccidae)
赤斑白条天牛 动物鞘翅目天牛科白条天牛属基因组Scientific Data5.82025.07中国科学院昆明动物研究所遗传进化与动物模型全国重点实验室Illumina, PacBio HiFi, Hi-C, and RNAChromosome-level genome assembly of stem borer Batocera rufomaculata using PacBio HiFi and Hi-C sequencing
硬刺高原鳅动物鳅科高原鳅属基因组Scientific Data5.82025.07中国科学院水生生物研究所PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level genome assembly of Triplophysa scleroptera
茶色狭翅夜蛾动物夜蛾科狭翅夜蛾属基因组Scientific Data5.82025.06中国农业科学院深圳农业基因组研究所PacBio 、Hi-C、 RNA-Seq、WGSa chromosome-level genome assembly of the Hermonassa cecilia (Lepidoptera: Noctuidae)
寄生蜂动物小环腹瘿蜂属基因组、转录组和蛋白质组、脂质组学Cell Genomics92025.06浙江大学农业与生物技术学院黄健华教授课题组联合中国科学院分子植物科学卓越创新中心詹帅研究员课题组PacBio 、Hi-C、 RNA-Seq、RNAi、酶活性测定、pH值测量、LC-MS/MS等A rare, evolutionarily conserved venom protein benefits endoparasitism across parasitoids
玉米植物群体遗传研究、转录组、蛋白组等The Plant Journal6.22025.06安徽农业大学生命科学学院作物抗逆育种与减灾国家地方联合工程实验室Pull-down实验、荧光互补实验、质谱分析、RNA-seq、CRISPR/Cas9基因编辑、群体遗传学等Transcription factor ZmNLP8 modulates nitrate utilization by transactivating ZmNiR1.2 in maize
木薯植物大戟科木薯属基因组、泛基因组、比较基因组、群体遗传结构分析、代谢组Molecular Plant17.12025.05海南大学三亚南繁研究院王文泉、夏志强团队，北京基因组研究所肖景发团队及合作团队PacBio、Nanopore、Hi-C、bionano、RNA-Seq、LC-ESI-MS/MS、qPCR 、酵母单杂交Pan-genome and haplotype map of cassava cultivars and wild ancestors provide insights into its adaptive evolution and domestication
保山猪动物单细胞转录组BMC Genomics3.52025.05云南农业大学动物科学技术学院Illumina单细胞、Nanopore单细胞RNA、苏木精-伊红（H&E）染色切片、免疫荧光染色Isoform-resolution single-cell RNA sequencing reveals the transcriptional panorama of adult Baoshan pig testis cells
家蚕动物蚕蛾科蚕蛾属群体遗传研究、GWAS、全长转录组、时空转录组、蛋白组等Science44.72025.05中国科学院分子植物科学卓越创新中心詹帅研究团队全长转录组、时空转录组、GWAS、CRISPR/Cas9、转基因、RT-PCR、免疫荧光分析、加权基因共表达网络分析（WGCNA）、ATAC-seq、亚细胞定位分析Functional polymorphism of CYCLE underlies diapause variation in moths
天桃木T2T植物漆树科杧果属基因组、比较基因组Plant Biotechnology Journal11.22025.05广西大学芒果团队PacBio HiFi、ONT超长、Hi-C和RNA-seqGap-free telomere-to-telomere assembly of the Mangifera persiciforma genome and its evolutionary insights on resistance
广东厚壳桂植物樟科厚壳桂属线粒体基因组Genomics3.42025.05广西师范大学生态学重点实验室Nanopore、NGSGenomic insights and phylogenetics of the mitochondrial genome of Cryptocarya
猪动物转录组Scientific Data5.82025.05云南农业大学动物科学与技术学院PB全长转录组、RNA-SeqComprehensive visceral transcriptome profiling of three pig breeds along altitudinal gradients in Yunnan
猪动物转录组DNA Research3.92025.05云南农业大学动物科学与技术学院PB全长转录组、RNA-SeqIntegrative Transcriptomic Analysis Reveals Alternative Splicing Complexity and Transcriptomic Diversity in Porcine Placentas Across Altitudes
鼠卵母细胞动物转录组Genome Biology10.12025.05浙江大学PB全长转录组ZAR1 and ZAR2 orchestrate the dynamics of maternal mRNA polyadenylation during mouse oocyte development
寄生蜂-亚利桑那恩蚜小蜂动物跳小蜂科基因组Scientific Data5.82025.05浙江省农业科学院植物保护与微生物研究所PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level genome assembly of the parasitoid wasp Aenasius arizonensis
鳊鱼动物鲤科鳊属基因组Scientific Data5.82025.05江苏省农业科学院台州农业科学研究所PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level assemblies of the White bream Parabramis pekinensis
稻瘟病菌真菌基因组Scientific Data5.82025.05中国科学院遗传发育所PacBio 、Hi-C、 RNA-Seq、WGSAn annotated near-complete sequence assembly of the Magnaporthe oryzae 70-15 reference genome
茶棍蓟马动物缨翅目蓟马科棍蓟马属基因组、比较基因组Pest Management Science3.82025.04中国农业科学院茶叶研究所李兆群团队PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level genome assembly of Dendrothrips minowai and genomic analysis highlights distinct adaptations to high polyphenols in tea plants
DMD基因医学DMDFrontiers in Pediatrics2.12025.04福建省福州市的福建妇幼保健院PacBio 、MLPAIncidental finding of a DMD exons 48–55 deletion during prenatal diagnosis
花生植物基因组、泛基因组、群体分析nature genetics31.72025.04河南农业大学Nanopore超长、PacBio HiFi和Hi-C技术，采用NextDenovo和HiC-Pro方法Pangenome analysis reveals structural variation associated with seed size and weight traits in peanut
鸭属动物基因组Cell Reports7.52025.04中国农业大学PacBio HiFi、Nanopore普通和超长、Hi-C、WGS、全长转录组Nine high-quality Anas genomes provide insights into Anas evolution and domestication
鼠尾草属线粒体植物基因组Scientific Data5.82025.04中国医学科学院北京协和医学院药用植物研究所NGS、ONTUnveiling the mitochondrial genome of Salvia splendens insights into the evolutionary traits within the genus Salvia
七丝鲚动物鲚属基因组Scientific Data5.82025.04中国南方海洋科学与工程广东省重点实验室PacBio 、Hi-C、 RNA-Seq、WGSA chromosome-level genome assembly of Gray’s grenadier anchovy, Coilia grayii
蒙桑T2T植物桑科桑属基因组Scientific Data5.82025.04安康学院PacBio HiFi、Nanopore超长、Hi-C、WGS、RNA-seqThe telomere-to-telomere genome assembly of the wild mulberry, Morus mongolica
金樱子植物蔷薇科蔷薇属基因组Scientific Data5.82025.04贵州教育大学PacBio 、Hi-C、 RNA-Seq、WGSChromosomal level genome assembly of medicinal plant Rosa laevigata
青蟹动物青蟹属梭子蟹亚科基因组、转录组、群体遗传学分析Nature communications14.72025.04中山大学王牧骅、何建国团队NGS、ONT、Hi-C测序、RNA-SeqVitellogenin receptor mediates heat adaptability of oocyte development in mud crabs and zebrafish
水稻植物禾本科基因组、泛基因组、演化与驯化Nature genetics31.72025.04中国科学院分子植物科学卓越创新中心韩斌院士团队ONT、HiFi、Hi-C测序A pangenome reference of wild and cultivated rice
雪豹动物猫科基因组、重测序，群体结构分析Genome Biology10.12025.04中国科学院动物研究所Nanopore、Illumina和Hi-CGenomic evidence for low genetic diversity but purging of strong deleterious variants in snow leopards
小麦T2T植物禾本科基因组Nature genetics31.72025.04北京大学现代农业研究院PacBio HiFi、Nanopore超长、Hi-C、WGS、Iso-seqA telomere-to-telomere genome assembly coupled with multi-omic data provides insights into the evolution of hexaploid bread wheat
多种植物植物Nature communications14.72025.04中山大学中山眼科中心Nanopore、BS-seqAccurate cross-species 5mC detection for Oxford Nanopore sequencing in plants with DeepPlant
新樟植物樟科、新樟属线粒体基因组BMC Plant Biology4.32025.03西南林业大学Nanopore、IlluminaComparative genomics and phylogenetic analysis of mitochondrial genomes of Neocinnamomum
高山栎植物栎属基因组、重测序Molecular Ecology4.52025.03中科院昆明植物研究所Genomic Insights Into Introgression Between Quercus aquifolioides and Its Sympatric Relatives Across Elevational Gradients
马尔尼菲篮状菌微生物真菌转录组PLOS GENETICS42025.03北京大学医学部ONT全长转录组、二代转录组Species-specific circular RNA circDS-1 enhances adaptive evolution in Talaromyces marneffei through regulation of dimorphic transition
荠菜T2T植物十字花科荠属基因组Biological Diversity3.032025.03中国科学院华南植物园PacBio HiFi、Nanopore超长、Hi-C、RNA-seq和NGSTelomere-to-telomere reference genome reveals subgenome divergence and large structural variants in Capsella bursa-pastoris (Brassicaceae)
大豆蚜动物蚜科基因组Scientific Data5.82025.03中国农科院植保所PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level genome assembly of soybean aphid
花身副丽鱼动物丽鱼科基因组Scientific Data5.82025.03中国水产科学研究院珠江水产研究所PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level genome assembly of Jaguar guapote (Parachromis manguensis) by massive parallel sequencing
黄喉拟水龟动物龟科拟水龟属基因组Molecular Ecology4.52025.03安徽师范大学生命科学学院Nanopore、WGS、Hi-C、转录组测序Discovery of XY Sex Chromosomes in Mauremys mutica Provides Insights Into the Role of KDM6B Gene in Coexistence of Temperature-Dependent and Genetic Sex Determination
美洲牛蛙动物蛙科基因组Scientific Data5.82025.03仲恺农业工程学院动物科学与技术学院PacBio 、Hi-C、 RNA-Seq、WGSA Chromosome-level genome assembly of the American bullfrog (Aquarana catesbeiana)
沟篮子鱼动物蓝子鱼科基因组Scientific Data5.82025.03中国水产科学研究院南海渔业研究所PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level genome assembly and annotation of the White-spotted spinefoot Siganus canaliculatus
大颚细锯脂鲤T2T动物脂鲤科基因组Scientific Data5.82025.03深圳大学生命科学与海洋学院PacBio HiFi、Nanopore超长、Hi-C、RNA-seq和NGSA complete telomere-to-telomere chromosome-level genome assembly of X-ray tetra (Pristella maxillaris)
紫背天葵植物秋海棠属基因组Scientific Data5.82025.03中国科学院华南植物园Nanopore、WGS、Hi-C、转录组测序A chromosomal-level genome assembly of Begonia fimbristipula (Begoniaceae)
陆地棉ZM113T2T植物锦葵科棉属基因组T2T、着丝粒演化Nature genetics31.72025.03中国农业科学院棉花研究所PacBio HiFi、Nanopore超长、Hi-C、Bionano和NGSA telomere-to-telomere genome assembly of cotton provides insights into centromere evolution and short-season adaptation
人动物哺乳动物Pore-CNature Structural & Molecular Biology12.52025.03中山大学中山眼科中心Pore-CReconstruction of diploid higher-order human 3D genome interactions from noisy Pore-C data using Dip3D
红芸豆T2T植物豆科菜豆属基因组、代谢组Journal of Genetics and Genomics6.62025.03山西农业大学PacBio HiFi、Nanopore超长、HiC、WGSGap-free genome assembly and metabolomics analysis of common bean provide insights into genomic characteristics and metabolic determinants of seed coat pigmentation
高粱T2T植物禾本科高粱属基因组、变异数据库Molecular Plant17.12025.03中国科学院遗传发育所PacBio HiFi、Nanopore超长、HiCA comprehensive omics resource and genetic tools for functional genomics research and genetic improvement of sorghum
毛樱桃植物李属基因组iMeta23.72025.03上海交通大学Nanopore、WGS、Hi-C、转录组测序New insights into genome assembly at the chromosome-level of Prunus tomentosa in evolution and cold tolerance
松塔牛肝属微生物真菌基因组IMA Fungus5.22025.02曲靖师范学院生物资源与食品工程学院WGSComparative mitogenomic analysis reveals variations and evolution of ectomycorrhizal fungal Strobilomyces
多孔菌科微生物真菌基因组、线粒体IMA Fungus5.22025.02北京林业大学生态与自然保护学院高效森林资源生产国家重点实验室PacBio Sequel 、WGSAssembly and comparative analysis of the complete mitochondrial genome of Daedaleopsis sinensis (Polyporaceae, Basidiomycota), contributing to understanding fungal evolution and ecological functions
粉褶蕈科真菌微生物真菌基因组、转录组、代谢组Biotechnology Journal3.22025.02上海交通大学生命科学与生物技术学院Nanopore、WGS、转录组、靶向代谢组Overexpression of Geranylgeranyl Diphosphate Synthase and Cyclase Enhances Pleuromutilin Production in Clitopilus Passeckerianus T6
云鲥动物鲱科基因组、转录组Biomolecules4.82025.02上海海洋大学Nanopore、WGS、Hi-C、转录组测序Analyses Identified Energy Conservation as a Key Strategy for Anadromous Adaptation of the Hilsa Shad, Tenualosa ilisha (Clupeiformes: Dorosomatidae)
智利小植绥螨动物小植绥螨属基因组Scientific Data5.82025.02中国农科院植保所PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level genome assembly of Phytoseiulus persimilis Athias-Henriot
瓦氏黄颡鱼动物鲿科黄颡鱼属基因组Scientific Data5.82025.02中国水产科学研究院珠江水产研究所PacBio 、Hi-C、 RNA-Seq、WGSA chromosome-level genome assembly of the male darkbarbel catfish (Pelteobagrus vachelli) using PacBio HiFi and Hi-C data
黑棘鲷动物鲷科棘鲷属基因组Scientific Data5.82025.02深圳大学生命科学与海洋学院水生基因组学实验室PacBio HiFi、Nanopore超长、Hi-C、RNA-seq和NGSA telomere-to-telomere genome assembly of the protandrous hermaphrodite blackhead seabream, Acanthopagrus schlegelii
沙门氏菌细菌重测序、转录组Microbial Pathogenesis3.32025.02华中农业大学二代WGS、RNA-seqExposure to DDAB disinfectants promotes antimicrobial resistance to antibiotics and collateral-sensitivity to polymyxins in Salmonella enterica
太平洋丽龟动物海龟科丽龟属基因组iScience4.62025.02南方海洋科学与工程广东实验室PacBio 、Hi-C、 RNA-Seq、WGSGenomic insights into marine environment adaptation and conservation of the threatened olive ridley turtle (Lepidochelys olivacea)
八倍体草莓植物蔷薇科草莓属分型基因组Genome Biology10.12025.02中科院昆明植物研究所PacBio HiFi、Nanopore超长、HiCA fully phased octoploid strawberry genome reveals the evolutionary dynamism of centromeric satellites
中国春小麦植物禾本科基因组Molecular Plant17.12025.02中国农业大学PacBio HiFi、Nanopore超长、HiC、NGSNear-complete assembly and comprehensive annotation of the wheat Chinese Spring genome
杨梅小环腹瘿蜂动物寄生蜂基因组Scientific Data5.82025.02浙江大学PacBio 、Hi-C、 RNA-Seq、WGSChromosome-level genome sequencing and assembly of the parasitoid wasp Leptopilina myrica
虎杖植物蓼科虎杖属基因组The Plant Journal6.22025.02河北大学杜会龙PacBio HiFi、Nanopore普通测序、HiC、NGS、RNA-seqThe mixed auto-/allooctoploid genome of Japanese knotweed (Reynoutria japonica) provides insights into its polyploid origin and invasiveness
嗜甲酸赵氏杆菌细菌基因组Nature50.52025.01农业农村部成都沼气科学研究所Nanopore、WGS、转录组、16S扩增子Methanol transfer supports metabolic syntrophy between bacteria and archaea
笔花豆属植物豆科基因组GigaScience11.82025.01海南大学A chromosome-scale genome assembly of the pioneer plant Stylosanthes angustifolia: insights into genome evolution and drought adaptation
粗切叶蜂动物切叶蜂属基因组Scientific Data5.82025.01中科院动物所Nanopore、WGS、Hi-C、转录组测序Chromosome-level genome assembly of Megachile sculpturalis Smith (Hymenoptera, Apoidea, Megachilidae)
斑海马海洋动物海马属基因组Scientific Data5.82025.01西安交通大学PacBio 、Hi-C、 RNA-Seq、WGSChromosome-scale genome assembly of three-spotted seahorse (Hippocampus trimaculatus) with a unique karyotype
大蓟马动物昆虫类基因组Pest Management Science3.82025.01华南农业大学植物保护学院PacBio HiFi、HiC、转录组、RNA干扰和生物测定Identification of the CYPome associated with acetamiprid resistance based on the chromosome-level genome of Megalurothrips  usitatus(Bagnall) (Thysanoptera:Thripidae)
红腹锦鸡T2T动物禽类基因组T2TZoological Research42025.01西南大学PacBio HiFi、Nanopore超长、HiC、转录组Transposable elements shape the landscape of heterozygous structural variation in a bird genome
绵羊T2T动物哺乳动物基因组T2T、重测序Nature genetics31.72025.01中国农业大学PacBio HiFi、Nanopore超长、Bionano、HiC、转录组Telomere-to-telomere sheep genome assembly identifies variants associated with wool fineness
梨小食心虫、苹果蠹蛾动物昆虫类基因组Genome Research6.22025.01北京市农林科学院Nanopore、WGS测序Hierarchical architecture of neo-sex chromosomes and accelerated adaptive evolution in tortricid moths
玉米植物禾本科重测序、群体Molecular Plant17.12024.12华中农业大学作物遗传改良国家重点实验室RNA-seq，eQTLA metabolic roadmap of waxy corn flavor
裂腹鱼动物鲤科基因组Scientific Data5.82024.12中山大学海洋科学学院PacBio 、Hi-C、 RNA-Seq、WGSA chromosome-level genome assembly of big-barbel schizothorcin, Schizothorax macropogon
外生菌根真菌和细菌共生真菌全长16SJournal of Fungi4.22024.12中科院微生物所全长16SCharacterization of Endofungal Bacteria and Their Role in the Ectomycorrhizal Fungus Helvella bachu
赤眼鳟动物鲤科基因组Scientific Data5.82024.12嘉应学院PacBio HiFi、HiC、转录组Chromosome-level genome assembly and annotation of Barbel chub Squaliobarbus curriculus
理县高原鳅动物鳅科基因组Scientific Data5.82024.12四川大学PacBio HiFi、HiC、转录组A chromosome-scale reference genome assembly for Triplophysa lixianensis
鳄雀鳝动物雀鳝科基因组Scientific Data5.82024.12中国科学院东北地理与农业生态研究所Nanopore 1D、Hi-C、转录组Chromosome-scale genome assembly and gene annotation of the Alligator Gar (Atractosteus spatula)
鳤鱼动物鲤科基因组Scientific Data5.82024.12九江市农业科学院PacBio HiFi、HiC、转录组A chromosome-level genomeassembly of critically endangered Ochetobius elongatus
小鼠T2T动物啮齿类基因组T2TScience44.72024.12西湖大学PacBio HiFi、Nanopore超长、Bionano、HiC、转录组The complete telomere-to-telomere sequence of a mouse genome
青蟹动物梭子蟹科基因组BMC Biology4.42024.11汕头大学广东省海洋生物技术重点实验室PacBio HiFi、Nanopore超长、HiC、转录组High-resolution chromosome-level genome of Scylla paramamosain provides molecular insights into adaptive evolution in crabs
玉米植物禾本科转录组International Journal of Molecular Sciences4.92024.11安徽农业大学二代转录组GPCR-like Protein ZmCOLD1 Regulate Plant Height in an ABA Manner
技术上支持植物植物超长提取、T2T组装Molecular Plant17.12024.11北京大学现代农业研究院ONT超长测序、Adaptive SamplingNanopore ultra-long sequencing and adaptive sampling spur plant complete telomere-totelomere genome assembly
21-羟化酶缺乏症动物哺乳动物CYP21A2突变Frontiers in Genetics2.82024.11华中科技大学同济医学院武汉儿童医院PacBio Sequel II 、MLPAComparison of long-read sequencing and MLPA combined with long-PCR sequencing of CYP21A2 mutations in patients with 21-OHD
玉米植物禾本科转录组，转录因子调控The Plant Journal6.22024.11安徽农业大学二代转录组、酵母双杂，敲除等实验The C2H2-type zinc finger transcription factor ZmDi19-7 regulates plant height and organ size by promoting cell size in maize
软件表观组预印刊2024.11中山大学中山眼科中心眼科国家重点实验室NanoporeDeepPlant: An Accurate Cross-Species 5mC Detection Tool for Oxford Nanopore Sequencing in Plants
细鳞斜颌鲴动物鲤科基因组Scientific Data5.82024.11安徽农业大学PacBio HiFi、HiC、RNA-seqChromosome-level genome assembly of the smallscale yellowfin (Plagiognathops microlepis)
胡桃T2T植物胡桃科基因组T2THorticultural Plant Journal4.22024.11中南林业科技大学PacBio HiFi、Nanopore超长、HiC、转录组The telomere-to-telomere gap-free genome assembly of Juglans sigillata
棕头雀鹛动物鸦雀科基因组Scientific Data5.82024.11中国科学院昆明动物研究所PacBio HiFi、HiC、WGS、RNA-seqa high-quality genome assembly of the Spectacled Fulvetta (Fulvetta rufcapilla) endemic to China
鲮鱼动物鲤科基因组Scientific Data5.82024.11中国水产科学院珠江水产研究所PacBio HiFi、HiC、转录组Chromosome-level genome assembly of the mud carp (Cirrhinus molitorella) using PacBio HiFi and Hi-C sequencing
山羊T2T动物哺乳动物基因组T2T、重测序Nature communications14.72024.11中国农业大学PacBio HiFi、Nanopore超长、Bionano、HiC、转录组Telomere-to-telomere genome assembly of a male goat reveals variants associated with cashmere traits
本氏烟T2T植物茄科基因组T2TNature plants15.82024.11北京大学现代农业研究院PacBio HiFi、Nanopore超长、Bionano、HiC、转录组The complete genome assembly of Nicotiana benthamiana reveals genetic and epigenetic landscape of centromeres
黄芪植物豆科基因组Nature plants15.82024.11中科院昆明植物研究所PacBio HiFi、HiC、转录组Total biosynthesis of the medicinal triterpenoid saponin astragalosides
人细胞系、杂交小鼠动物人三维基因组预印刊2024.10中山大学poreCReconstruction of Diploid High-Order 3D Genome Interactions from Long Noisy Concatemers
蛤蜊动物帘蛤科基因组、转录组Biology 3.62024.10中国水产科学研究院黄海水产研究所PacBio HiFi、NGS、RNA-seq、HiCClam Genome and Transcriptomes Provide Insights into Molecular Basis of Morphological Novelties and Adaptations in Mollusks
肉芽肿性小叶性乳腺炎副克氏棒状杆菌微生物细菌基因组 signal transduction and targeted therapy40.82024.10武汉大学Nanopore、WGS测序Corynebacterium parakroppenstedtii secretes a novel glycolipid to promote the development of granulomatous lobular mastitis
裂腹鱼动物鲤科比较基因组、转录组、线粒体基因组Molecular Biology and Evolution112024.10中国科学院动物研究所PacBio iso-SeqRecent and Recurrent Autopolyploidization Fueled  Diversification of Snow Carp on the Tibetan Plateau
保山猪动物猪科转录组Animal Reproduction1.62024.10吕梁大学PacBio iso-Seq、RNA-seqLong-read and short-read RNA-seq reveal the transcriptional regulation characteristics of PICK1 in Baoshan pig testis
兰州百合植物百合属基因组、转录组The Innovation33.22024.10南京农业大学Nanopore、Hi-C、转录组测序The evolutionary tale of lilies: Giant genomes derived from transposon insertions and polyploidization
水熊虫动物缓步动物门基因组Science44.72024.10国家蛋白质科学中心　Multi-omics landscape and molecular basis of radiation tolerance in a tardigrade
现代月季植物蔷薇科蔷薇属基因组、重测序Nature plants15.82024.10中国农业大学PacBio HiFi、Nanopore超长、HiC、pore-CHaplotype-resolved genome assembly and resequencing provide insights into the origin and breeding of modern rose
肝癌样本动物哺乳动物全长转录组Cell Reports7.52024.10北京化工大学PB全长转录组A MYC-STAMBPL1-TOE1 positive feedback loop mediates EGFR stability in hepatocellular carcinoma
碧冬茄（矮牵牛）植物茄科矮牵牛属基因组bioRxiv（预印版）2024.09新西兰皇家农业科学院PacBio （sequel）、NGS、HIC、BionanoChromosome-level Genome Assembly and Annotation of Petunia hybrida
珊瑚菜植物伞形科基因组调研、细胞学分析BMC Plant Biology4.32024.09福建省农林大学海峡应用植物系统生物学重点实验室MGI WGS、微分干涉对比（DIC）显微镜Cytological analysis of flower development, insights into suitable growth area and genomic background: implications for Glehnia littoralis conservation and sustainable utilization
川崎病患者动物哺乳动物qPCRStem Cell Research0.82024.09济宁医学院附属医院qPCRGeneration of an induced pluripotent stem cell (iPSC) line (INNDSUi007-A) from a patient with Kennedy disease
桃T2T植物蔷薇科李属基因组T2T、重测序Plant Biotechnology Journal10.12024.09河南农业大学Nanopore超长、Hi-C、转录组、GWASA gap-free genome of pillar peach (Prunus persica L.) provides new insights into branch angle and double flower traits
豆荚螟动物螟蛾科基因组Scientific Data5.82024.09广东省农科院Nanopore、Hi-C、转录组测序A chromosome-level genome assembly of the legume pod borer, Maruca vitrata Fabricius (Lepidoptera: Crambidae)
人细胞系动物人软件开发Briefings in Bioinformatics6.82024.08中山大学中山眼科中心眼科国家重点实验室Nanopore，甲基化DeepBAM: a high-accuracy single-molecule CpG methylation detection tool for Oxford nanopore sequencing
甘蓝根系微生物细菌植物抗病基因重塑根系微生物Microbiome13.82024.08中国农业科学院蔬菜花卉研究所16S、ITS、ONT、转录组Deciphering the role of rhizosphere microbiota in modulating disease resistance in cabbage varieties
茶树菇真菌球盖菇科田头菇属基因组T2TJournal of Fungi4.22024.08江西农业大学MGI、PacBio HiFi、HiC、转录组Telomere-to-Telomere Haplotype-Resolved Genomes ofAgrocybe chaxingu Reveals Unique Genetic Features andDevelopmental Insights
泥鳅动物鳅科基因组Scientific Data5.82024.08内江师范大学PacBio HiFi、HiCChromosome-level genome assemblies of vulnerable male and female elongate loach (Leptobotia elongata)
比尔兹利粉蚧动物粉蚧科基因组Scientific Data5.82024.08中国农业大学Nanopore、Hi-C、转录组测序Chromosome-level genome assembly of the invasive pest Pseudococcus jackbeardsleyi (Hemiptera: Pseudococcidae)
颈槽蛇动物水游蛇科基因组Scientific Data5.82024.08四川农业大学PacBio HiFi、HiC、转录组Chromosome-level genome assembly and annotation of the Rhabdophis nuchalis (Hubei keelback)
雷蒙德氏棉T2T植物锦葵科基因组T2TNature genetics31.72024.08武汉大学PacBio HiFi、Nanopore超长、HiC、ONT转录组、二代转录组A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development
四纹豆象动物昆虫基因组Scientific Data5.82024.07中科院动物所MGI、Nanopore、Hi-C、转录组测序High-quality reference genome of cowpea beetle Callosobruchus maculatus
罂粟T2T植物药用植物基因组T2TCell Genomics11.12024.07西安交通大学（叶凯）PacBio HiFi、Nanopore超长、HiC、转录组The centromere landscapes of four karyotypically diverse Papaver species provide insights into chromosome evolution and speciation
鲨鱼动物鲨鱼科基因组Cell Genomics11.12024.07西南大学PacBio HiFi、HiC、转录组Comparative genomics illuminates karyotype and sex chromosome evolution of sharks
四倍体樱桃植物蔷薇科基因组Horticulture Research7.62024.07上海交通大学PacBio HiFi、Nanopore超长、HiC、转录组Haplotype-resolved genome assembly for tetraploid Chinese cherry (Prunus pseudocerasus) offers insights into fruit firmness
猪草条纹萤金花虫动物昆虫基因组Scientific Data5.82024.07中国农科院植保所MGI、Nanopore、Hi-C、转录组测序Chromosome-level genome assembly of an oligophagous leaf beetle Ophraella communa (Coleoptera: Chrysomelidae)
依兰香植物番荔枝科基因组New Phytologist8.32024.07中科院西双版纳热带植物园PacBio HiFi、Nanopore超长、HiC、转录组The chromosome-level genome assembly of Cananga odorataprovides insights into its evolution and terpenoid biosynthesis
云岭牛动物哺乳动物重测序Frontiers in Veterinary Science2.62024.07云南农业大学PacBio HiFi、MGI T7 WGSAnalysis of genomic copy number variations through whole-genome scan in Yunling cattle
草地贪夜蛾动物昆虫转录组Entomologia Generalis5.62024.07浙江大学二代转录组IlluminaTranscriptome analysis reveals divergent parasitic strategiesbetween two larval endoparasitoids of Spodoptera frugiperda
果蝇捶角细蜂动物昆虫基因组elife6.42024.06浙江大学Pacbio 、Hi-C、转录组、WGSCoordinated molecular and ecological adaptations underlie a highly successful parasitoid
人基因扩增子三代测序动物哺乳动物重测序Cell45.52024.06武汉大学中南医院PacBio HiFi、Nanopore 1D测序Amplification editing enables efficient and precise duplication of DNA from short sequence to megabase and chromosomal scale
海牛动物哺乳动物基因组iScience4.62024.06南方海洋科学与工程广东省重点实验室Pacbio 、Hi-C、转录组、WGSThe genome of African manatee Trichechus senegalensis reveals secondary adaptation to the aquatic environment
动物软体动物基因组预印刊2024.06
华中樱桃植物蔷薇科基因组Molecular Horticulture10.62024.06上海交通大学MGI、Nanopore、Hi-C、转录组测序Chromosome-level genome assembly provides insights into the genetic diversity, evolution, and flower development of Prunus conradinae
茶灰尺蠖动物昆虫重测序crop health2024.06浙江大学二代WGSWhole-genome resequencing of tea grey geometrid provides insights into their population structure and adaptation to tea crops
短头熊蜂动物昆虫基因组、重测序Science Advance11.72024.06中国农业大学Pacbio 、Hi-C、转录组、WGSDoes coevolution in refugia drive mimicry in bumblebees? Insights from a South Asian mimicry group
泥蟹动物甲壳类基因组预印刊2024.06汕头大学MGI、Nanopore、Hi-C、转录组测序High-resolution chromosome-level genome provides molecular insights into adaptive evolution in crabs
斑点半鲿（斑鳠）动物鲿科基因组Scientific Data5.82024.06中国渔业科学研究院Pacbio 、Hi-C、转录组Gap-free chromosome-level genomes of male and female spotted longbarbel catfish Hemibagrus guttatus
松木内生假单胞菌细菌基因组Microorganisms4.12024.05南京林业大学ONT细菌完成图The Growth-Promoting and Colonization of the Pine Endophytic Pseudomonas abietaniphila for Pine Wilt Disease Control
须弥芥属+糖芥属植物十字花科基因组Cell66.852024.05中国科学院分子植物科学卓越创新中心、PacBio Hifi、NGS、HIC、Bionano测序、RNA-Seq、ChIP-seqReciprocal conversion between annual and polycarpic perennial flowering behavior in the Brassicaceae
绵羊动物哺乳动物基因组denvo、趋同进化Genome Biology18.012024.6.6中国农业大学动物科学技术学院羊遗传与种质创新研究中心PacBio Hifi、NGS、HIC、Bionano测序Structural variant landscapes reveal convergent signatures of evolution in sheep and goats
香瓜茄植物茄科基因组BMC Plant Biology4.32024.05云南农业大学Pacbio 、Hi-C、转录组De novo assembly of the complete mitochondrial genome of pepino (Solanum muricatum) using PacBio HiFi sequencing: insights into structure, phylogenetic implications, and RNA editing
马铃薯野生种Solanum pinnatisectum植物茄科基因组Frontiers in Genetics2.82024.05宜春学院MGI、Nanopore、Hi-C、转录组测序Genome-wide identification analysis in wild-type Solanum pinnatisectum reveals some genes defending against Phytophthora infestans
红孢子虫属动物原生动物宏基因组Emerging Microbes & Infections8.42024.05北京市微生物与流行病学研究所宏基因组Genomic characters of Anaplasma bovis and genetic diversity in China
中华蜜蜂动物昆虫重测序Molecular Ecology4.52024.05中国农业大学二代WGSDrivers of genomic differentiation landscapes in populations of disparate ecological and geographical settings within mainland Apis cerana
滇南小耳猪动物哺乳动物转录组Genes2.82024.05吕梁学院二代转录组、三代ISO-seq全长转录组Transcriptional Regulation Analysis Provides Insight into theFunction of GSK3β Gene in Diannan Small-Ear Pig Spermatogenesis
人动物哺乳动物重测序Clinical Genetics2.92024.05浙大医学院附属儿童医院Illumina Genotypic and phenotypic features of 39 Chinese patients with glycogen storage diseases type I, VI, and IX
鲫鱼动物鲤科重测序Frontiers in Genetics2.82024.05华南师范大学NanoporeDeciphering male influence in gynogenetic Pengze crucian carp (Carassius auratus var. pengsenensis): insights from Nanopore sequencing of structural variations
木香花植物蔷薇科基因组T2THorticultural Plant Journal5.72024.05皖南医学院PacBio HiFi、Nanopore超长、HiC、转录组Rosaceae phylogenomic studies provide insights into the evolution of new genes
水稻T2T植物禾本科基因组T2TNature Communications14.72024.05中国农业科学院作物科学研究所PacBio Hifi、Nanopore 超长、NGS、HIC、Bionano测序Haplotype-resolved gapless genome assembly and chromosome segment substitution lines facilitated gene identification in wild rice
紫苞芭蕉和朝天蕉植物芭蕉科基因组Horticulture Research8.72024.05中国科学院华南植物园Chromosome-level genome assemblies of Musa ornata and M. velutina provide insights into pericarp dehiscence and anthocyanin biosynthesis in banana
鹿角甲虫动物昆虫基因组Scientific Data5.82024.04安徽大学MGI、Nanopore、Hi-C、转录组测序The first chromosome-level genome of the stag beetle Dorcus hopei Saunders, 1854 (Coleoptera: Lucanidae)
蓝牛羚动物哺乳动物重测序Nature Communications14.72024.04哥本哈根大学MGI WGSIntrogression and disruption of migration routes have shaped the genetic integrity of wildebeest populations
野生二粒小麦植物禾本科基因组Nature Communications14.72024.04中国科学院种子设计创新研究院遗传与发育生物学研究所PacBio HiFi、HiC、转录组、重测序A membrane associated tandem kinase from wild emmer wheat confers broad-spectrum resistance to powdery mildew
大豆食心虫动物昆虫基因组BMC Genomics3.52024.04吉林省农业科学院MGI、Nanopore、Hi-C、转录组测序A chromosome-level genome assembly of the soybean pod borer: insights into larval transcriptional response to transgenic soybean expressing the pesticidal Cry1Ac protein
小球藻植物绿藻基因组BMC Genomics3.52024.04西安交通大学PacBio Hifi、Nanopore 超长、NGS、HIC、测序Near telomere-to-telomere genome assemblies of two Chlorella species unveil the composition and evolution of centromeres in green algae
人动物重测序Orphanet Journal of Rare Diseases3.42024.04北京大学人民医院二代WESDual rare genetic diseases in five pediatric patients: insights from next-generation diagnostic methods
光苔植物光苔科转录组New Phytologist8.32024.04华东师范大学二代转录组Is RNA editing truly absent in the complex thalloid liverworts (Marchantiopsida)? Evidence of extensive RNA editing from Cyathodium cavernarum
人动物重测序Orphanet Journal of Rare Diseases3.42024.04解放军总医院二代目标区域捕获测序Clinical and genetic study of ABCB4 gene-related cholestatic liver disease in China: children and adults
SVhawkeye重测序 Frontiers in Genetics2.82024.04武汉科技大学耐火材料与冶金国家重点实验室变异可视化软件SVhawkeye: an ultra-fast software for user-friendly visualization of targeted structural fragments from BAM files
NextDenovo基因组Genome Biology18.012024.04希望组NanoporeNextDenovo: an efficient error correction and accurate assembly tool for noisy long reads
长颖燕麦植物禾本科基因组Scientific Data5.82024.04中国科学院华南植物园MGI、Nanopore、Hi-C、转录组测序Chromosome-level genome assembly of the diploid oat species Avena longiglumis
绞股蓝T2T植物药用植物基因组T2TPlant Communications9.42024.04中国医学科学院药用植物研究所PacBio Hifi、Nanopore 超长、转录组、HIC、Bionano测序Insights into the dammarane-type triterpenoid spaonin biosynthesis from the telomere-to-telomere genome of Gynostemma pentaphyllum
康乃馨T2T植物石竹科基因组T2THorticulture Research8.72024.01中国农业科学院深圳农业基因组研究所（岭南现代农业科学与技术广东省实验室深圳分中心）PacBio HiFi、Nanopore超长、HiC、转录组The haplotype-resolved telomere-to-telomere carnation (Dianthus caryophyllus) genome reveal the correlation between genome architecture and gene expression
长颈鹿动物哺乳动物重测序Current Biology8.12024.03哥本哈根大学MGI WGSGiraffe lineages are shaped by major ancient admixture events
鲩肠袋虫动物基因组Scientific Data5.82024.03中科院水生生物研究所MGI、Nanopore、Hi-C、转录组测序Genome assembly of a symbiotic balantidia (Balantidium ctenopharyngodoni) in fish hindgut
水稻植物禾本科基因组预印版2024.03杭州农业大学MGI、Nanopore、Hi-C、转录组测序Genomic and transcriptomic analyses of the elite rice variety Huizhan provide insight into disease resistance and heat tolerance
鸭子动物禽类基因组预印版2024.03中国农业大学PacBio Revio、Nanopore 超长、转录组、Hi-C、Bionano测序Nine high-quality Anas genomes provide new insights into Anas evolution and domestication
乌头质体植物毛茛科基因组BMC Genomics3.52024.03贵州教育大学PacBio、T7 WGSComparative analysis of the organelle genomes of Aconitum carmichaelii revealed structural and sequence differences and phylogenetic relationships
人动物重测序BMC Genomics3.52024.03山东大学齐鲁医院PacBioHiFi long-read amplicon sequencing for full-spectrum variants of human mtDNA
酵母真菌基因组Yeast2.22024.03清华大学ONT超长Reinstatement of the fission yeast species Schizosaccharomyces versatilis Wickerham et Duprat, a sibling species of Schizosaccharomyces japonicus
九香虫动物昆虫转录组Cellular and Molecular Life Sciences6.22024.03中国农业大学PacBio HiFi、HiC、转录组The first A‑to‑I RNA editome of hemipteran species Coridius chinensisreveals overrepresented recoding and prevalent intron editingin early‑diverging insects
人动物哺乳动物重测序Neurological Sciences2.72024.03南昌大学WESEncephalitis-like episodes with cortical edema and enhancement in patients with neuronal intranuclear inclusion disease
传粉蜂肠道菌Snodgrassella communis细菌细菌完成图Microbiome13.82024.03昆明理工大学16S rRNA、Illumina WGS、ONT测序Identification of the mutual gliding locusas a factor for gut colonization in non-nativebee hosts using the ARTP mutagenesis
人动物哺乳动物重测序预印版2024.03山东大学HiFi目标区域捕获测序Targeted long-read sequencing identifies missing pathogenic variant in unsolved 11β-hydroxylase deficiency
松墨天牛动物昆虫基因组Scientific Data5.82024.03河北大学Pacbio 、Hi-CA near-complete genome assembly of Monochamus alternatus a major vector beetle of pinewood nematode
普通白菜、红菜薹T2T植物十字花科基因组T2TScience Bulletin18.92024.03武汉大学生命科学学院PacBio Revio、Nanopore 超长、转录组、Bionano测序The complexity of structural variations in Brassica rapa revealed by assembly of two complete T2T genomes
高粱T2T植物禾本科基因组T2TThe Crop Journal6.62024.04贵州省农业科学院旱粮研究所、贵州茅台酒股份有限公司PacBio Revio、Nanopore、Hi-C、转录组测序A telomere-to-telomere genome assembly of Hongyingzi, a sorghum cultivar used for Chinese Baijiu production
人、玉米动物、植物基因组预印版2024.03深圳基因组所ONT超长Gapless assembly of complete human and plant chromosomes using only nanopore sequencing
竹子植物禾本科亚基因组、转录组Nature Genetics30.82024.03中国科学院昆明植物研究所PacBio Revio、Nanopore、Hi-C、转录组测序Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance
萤火虫动物昆虫基因组、转录组Nature Communications16.62024.03华中农业大学植科院MGI、Nanopore、Hi-C、转录组测序Key homeobox transcription factors regulate the development of the firefly’s adult light organ and bioluminescence
来源立枯丝核菌的肠杆菌微生物真菌基因组Plant Microbiology2024.02Nanopore测序Genome analysis and hyphal movement characterization of the hitchhiker endohyphal Enterobacter sp. from Rhizoctonia solani
人动物重测序Clinical and Translational Medicine7.92024.02中南大学NanoporeNanopore sequencing with T2T-CHM13 for accurate detection and preventing the transmission of structural rearrangements in highly repetitive heterochromatin regions in human embryos
长雄野生稻植物禾本科基因组、时空转录组Plant Biotechnology Journal10.12024.02云南大学Pacbio 、Hi-C、时空转录组Spatiotemporal transcriptomic atlas of rhizome formationin Oryza longistaminata
毛地黄植物药用植物基因组预印刊2024.02德国布伦瑞克工业大学植物生物学与金砖国家研究所MGI、Nanopore、Hi-C、转录组测序Genome sequence of the medicinal and ornamental plant Digitalis purpurea reveals the molecular basis of flower color variation
猪血木植物山茶科基因组DNA Research3.92024.02中科院华南植物园Pacbio 、Hi-C、转录组Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China
松墨天牛动物昆虫基因组Scientific Data5.82024.02北京林业大学MGI、Nanopore、Hi-C、转录组测序Chromosome-level genome assembly of the Japanese sawyer beetle Monochamus alternatus
云岭牛动物哺乳动物基因组Scientific Data5.82024.02云南农业大学Pacbio 、Hi-CChromosome-level genome assembly and annotation of the Yunling cattle with PacBio and Hi-C sequencing data
乙型肝炎病毒(HBV)病毒基因组Gut24.52024.02中国医学科学院/北京协和医学院赵宏团队ONTHBV integrations reshaping genomic structures promote hepatocellular carcinoma
人HCT116细胞系动物重测序DNA Repair32024.02同济大学ONT、END-seqKu80 is indispensable for repairing DNA double-strand breaks at highly methylated sites in human HCT116 cells
白鲢动物鲤科转录组Journal of Agricultural and Food Chemistry5.72024.01江南大学全长转录组、蛋白组Postmortem Muscle Proteome Characteristics of Silver Carp (Hypophthalmichthys molitrix): Insights from Full-Length Transcriptome and Deep 4D Label-Free Proteomic
大麦植物禾本科转录组Journal of Advanced Research11.42024.01塔斯马尼亚大学，中国农科院作科所二代转录组Diversity of Gibberellin 2-oxidase genes in the barley genome offers opportunities for genetic improvement
野菊植物药用植物基因组、转录组Cell Reports8.82024.01广州中医药大学illumina、Nanopore、Hi-C、转录组测序Genomic insights into the evolution of flavonoid biosynthesis and O-methyltransferase and glucosyltransferase in Chrysanthemum indicum
青石斑鱼海洋动物鱼类基因组Scientific Data5.82024.01中山大学生命科学学院水生经济动物研究所Pacbio Revio、Hi-CChromosome-level genome assembly and annotation of the yellow grouper, Epinephelus awoara
江孜沙棘植物胡颓子科沙棘属植物基因组Scientific Data5.82024.01云南大学MGI、Nanopore、Hi-C、转录组测序Chromosome-level genome assembly of Hippophae gyantsensis
萤火虫基因组Molecular Biology and Evolution10.72024.01中国科学院昆明动物研究所ONT、illuminaMultiple origins of bioluminescence in beetles and evolution of luciferase function
人动物面肩肱患者基因组Genetics in Medicine Open6.62024.01清华大学ONTGenetic diagnosis of facioscapulohumeral muscular dystrophy type 1 using rare-variant linkage analysis and long-read genome sequencing
Nextpolish2基因组Genomics, Proteomics & Bioinformatics11.52024.01西安交通大学ONTNextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads
栽培香蕉植物芭蕉科基因组Nature Genetics31.72024.01福建农林大学植物保护学院，中国农科院农业基因组研究所，中国热带农业科学院热带生物技术研究所 PacBio HiFi，illumina，Hi-COrigin and evolution of the triploid cultivated banana genome
谷子植物谷物T2TMolecular Plant27.52023.12中国农业科学院作物科学研究所HiFi、ONT超长、HiC、NGSA complete reference genome assembly for foxtail millet and Setaria-db, a comprehensive database for Setaria
茄科物种基因组、代谢物Nature Communications16.62023.12兰州大学生态学院Pacbio HiFi、ONT、Hi-CMultiple independent losses of the biosynthetic pathway for two tropane alkaloids in the Solanaceae family
青冈植物基因组Molecular Ecology Resources7.72023.12中南林业科技大学林学院Pacbio HiFi、Hi-CHigh-quality haplotype-resolved genome assembly for ring-cup oak (Quercus glauca) provides insight into oaks demographic dynamics
DMD医学SViScience5.82023.10中国医学科学院北京协和医院医学研究中心临床遗传学实验室Uncovering the true features of dystrophin gene rearrangement and improving the molecular diagnosis of Duchenne and Becker muscular dystrophies
眼咽远端型肌病医学基因组、转录组、甲基化BMC Medical Genomics2.72023.10中国医学科学院北京协和医学院医院神经内科ONT、IlluminaA large pedigree study confrmed the CGG repeat expansion of RILPL1 Is associated with oculopharyngodistal myopathy
黍稷植物谷物图泛基因组Nature Genetics30.82023.12.1中国科学院动物研究所PacBio HiFiPangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet
云豹动物基因组Sci Adv15.12023.10陕西师范大学ONT、Hi-C、illuminaHow genomic insights into the evolutionary history ofclouded leopards inform their conservation
柳树植物基因组Nature Communications16.62023.10美国得克萨斯州拉伯克得克萨斯理工大学生物科学系ONT、Hi-C、illuminaEvolution of a ZW sex chromosome system inwillows
中华家系一号重复区域、复杂结构变异和新生突变Genome Biology12.32023.12西安交大Illumina、BGI、PacBio和Oxford Nanopore TechnologyHaplotype-resolved assemblies and variant benchmark of a Chinese Quartet
中华家系一号变异检测Genome Biology 12.32023.11复旦大学llumina、NovaSeq, MGISEQ-2000、DNBSEQ-T7 (30-60x coverage)、ONT (100× coverage),PacBio Sequel (80× coverage)、Sequel II (30× coverage)Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance
牛动物基因组Nature Communications16.62023.10中国国家生物医学分析中心南湖实验室PacBio HiFi、ONT Ultra-long、Illumina NGS、BioNano、Hi-CDe novo genome assembly depicts the immune genomic characteristics of cattle 
猪动物全长转录组Scientific Data9.82023.10云南农业大学动物科学技术学院PacBio、IlluminaLong-and short-read RNA sequencing from five reproductive organs of boar
寄生蜂动物全长转录组、蛋白组Genome Research72023.10浙江大学 IlluminaComprehensive isoform-level analysis reveals the contribution of alternative isoforms to venom evolution and repertoire diversity
人类医学基因组Psychiatric Genetics0.92023.09解放军总医院第七医学中心高级儿科神经发育科 IlluminaTwo novel variants of the STXBP1 and CHRNB2 genes identified in a Chinese boy with refractory seizures and developmental delay
人类医学方法小eccDNAsClinical and Translational Medicine10.62023.09北京大学第五临床医学学院ONTSmall Extrachromosomal Circular DNAs as Biomarkers for Multi-Cancer Diagnosis and Monitoring
人类动物方法多组学nature biotechnology46.92023.09复旦大学生命科学学院ONT、PacBio、IlluminaMulti-omics data integration using ratio-based quantitative profiling with Quartet reference materials
菠菜植物方法基因组New Phytologist9.42023.07河南师范大学生命科学学院Illumina、ONTA rapid method for assembly of single chromosome and identification of sex determination region based on single-chromosome sequencing
野生大麦植物作物基因组、转录组Scientific Data9.82023.08长江大学作物抗逆性技术研究中心ONT(~130x)、Illumina(~68x)、Hi-C(~122x)、BioNano、PacBioHigh-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data
人类T2T中国人T2TGenomics, Proteomics & Bioinformatics9.52023.08北京大学人民医院HiFi、ONT Ultra-long、BioNano、Illumina HiSeq、Hi-CT2T-YAO: A Telomere-to-telomere Assembled Diploid Reference Genomefor Han Chinese
马齿苋植物基因组Plant Physiology7.42023.08中国科学院植物研究所Nanopore、Bionano、Hi-CGene duplications facilitate C4-CAM compatibility in common purslane
人类医学ARAF突变基因组、全外显子Clinical and Experimental Medicine4.62023.06首都儿科研究所血液科NGSSomatic ARAF mutations in pediatric Langerhans cell histiocytosis:clinicopathologic, genetic and functional profling
长豇豆植物豆类蔬菜T2TPlant Biotechnology Journal13.82023.08广东省农业科学院蔬菜研究所叶菜豆类资源与育种团队140x ONT超长、60x HiFi、Hi-C、illuminaA near-complete assembly of asparagus bean provides insights into anthocyanin accumulation in pods
兰花螳螂、枯叶螳螂动物昆虫基因组Nature Communications16.62023.07中国科学院动物研究所ONT、Hi-C、illuminaEvolutionary genomics of camouflage innovation in the orchid mantis
水稻植物作物T2TMolecular Plant27.52023.08基因组所220X ONT超长、80X HiFi、Hi-C、illuminaA complete assembly of the rice Nipponbare reference genome
枣植物T2TPlant Communications10.52023.07河北农业大学70X HiFi、123X ONT、105X Hi-CInsights into the evolution and spatial chromosome architecture of jujube from an updated gapless genome assembly
人基因组汉族男性T2TCell Research44.12023.07浙江大学医学院附属第四医院国际医学研究所基因组研究室ONT、PacBio、HiFiThe complete and fully-phased diploid genome of a male Han Chinese
超蔷薇类植物被子植物基因组Molecular Ecology Resources7.72023.07河南大学生命科学学院ONT、Hi-CPhylogenomic and syntenic data demonstrate complex evolutionary processes in early radiation of the rosids
海南砂、阳春砂植物基因组Plant Physiology7.42023.07广州中医药大学岭南中药资源教育部重点实验室Comparison of Fructus Amomi genomes reveals the genetic basis of volatile terpenoids divergence and bornyl diphosphate synthase evolution
人类肠道微生物宏基因组Advanced Science15.12023.06华中科技大学ONT、PacBio 、HiFiLong-Read Sequencing Reveals Extensive DNA Methylations in Human Gut Phagenome Contributed by Prevalently Phage-Encoded Methyltransferases
蛇动物基因组Cell64.52023.06中国科学院成都生物研究所ONT、PacBio 、IlluminaLarge-scale snake genome analyses provide insights into vertebrate development
人泛基因组中国人泛基因组Nature64.82023.06复旦大学生命科学学院进化生物学中心PacBio、NanoporeA pangenome reference of 36 Chinese populations
灵长类动物灵长类基因组Science56.92023.06昆明动物研究所ONT、PacBio Phylogenomic analyses provide insights into primate evolution
玉米植物农作物T2TNature Genetics30.82023.06中国农业大学植物遗传育种系PacBio 、IlluminaA complete telomere-to-telomere assembly of the maize genome
疾病Eur J Hum Genet5.22023.05中国医学科学院北京协和医院神经内科Identification and characterization of two DMD pedigrees with large inversion mutations based on a long-read sequencing pipeline
耳蜗突触病变单细胞单细胞全长转录组Nature Communications16.62023.05上海交通大学医学院上海市第九人民医院耳鼻咽喉头颈外科Illumina、ONT、PacBio Cochlear transcript diversity and its role in auditory functions implied by an otoferlin short isoform
NextPolish2bioRxiv2023.04西安交大NextPolish3NextPolish2：a repeat-aware polishing tool for genomes assembled using HiFi long reads
微萍植物模式植物基因组、单细胞转录组PNAS12.7792023.04北京大学和美国密西西比州立大学ONT超长、illumina、Hi-C、bionanoPlant-on-chip：core morphogenesis processes in the tiny plant Wolffia australiana
NextDenovo2023.03北京希望组BAC-longAn efficient error correction and accurate assembly tool for noisy long reads
脊髓性肌萎缩医学SMANeuromuscular Disorders3.5382023.03首都儿科研究所医学遗传学系ONTNovel Alu-mediated deletions of the SMN1 gene were identified by ultra-long read sequencing technology in patients with spinal muscular atrophy
结直肠癌医学CRCPLOS GENETICS6.022023.03华中科技大学同济医学院协和医院HiPore-CLong-read sequencing identifies novel structural variations in colorectal cancer
三维基因组其他方法HiPore-CNature Communications17.6942023.03中山大学中山眼科中心肖传乐团队PacBio （~64X CLR，~178X CCS）、MGI（~84X ）、Hi-C（~238X ）High-throughput Pore-C reveals the single-allele topology and cell type-specificity of 3D genome folding
南极磷虾动物甲壳动物基因组Cell66.852023.03中国水产科学研究院黄海水产研究所Nanopore（~280x）、Illumina（~106x）、Hi-C（~150x）The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights
家鸡动物家禽T2TPNAS12.7792023.02西南大学生命科学学院PacBio （~52X CCS）、Ultralong Nanopore(~80X )、Hi-CEvolutionary analysis of a complete chicken genome
杂草植物草本基因组、重测序Nature Communications17.6942023.02植物分子遗传学国家重点实验室Nanopore（~140x）、Illumina（~100x）、Hi-C（~150x）Common evolutionary trajectory of short life-cycle in Brassicaceae ruderal weeds
樱花植物小乔木基因组、重测序The Plant Journal7.0912023.02北京林业大学园林学院Nanopore（~300×）、Illumina（~60x）、BioNano-Irys（~264×）、Hi-C（~135x）Genome assembly, resequencing and genome-wide association analyses provide novel insights into the origin, evolution and flower colour variations of flowering cherry
鸡动物家禽基因组、SVNature Communications17.6942023.01罗切斯特大学Nanopore(~30X )Amniotes co-opt intrinsic genetic instability to protect germ-line genome integrity
橡胶树植物树木基因组Plant Biotechnology Journal13.2632023.01中国热带农业科学院橡胶研究所BionanoChromosome-level wild Hevea brasiliensis genome provides new tools for genomic-assisted breeding and valuable loci to elevate rubber yield
马铃薯块茎蛾昆虫害虫基因组Scientific Data8.5012022.12中国农业科学院植物保护所植物病虫害生物学国家重点实验室ONT超长（~119.81x）、Hi-C（~130.57x）、Illumina（~54.22x）Chromosomal-level genome assembly of potato tuberworm, Phthorimaea operculella: a pest of solanaceous crops
急淋白血病医学白血病Cancers6.5752022.12首都医科大学北京儿童医院ONT（~134.43×）、Hi-C、IlluminaOptical Genome Mapping for Comprehensive Assessment of Chromosomal Aberrations and Discovery of New Fusion Genes in Pediatric B-Acute Lymphoblastic Leukemia
寄生蜂昆虫昆虫类基因组Nature Communications17.6942022.12浙江大学昆虫科学研究所ONT超长、HIFI、illumina、HICGenomic signatures associated with maintenance of genome stability and venom turnover in two parasitoid wasps
马铃薯植物农作物T2TMolecular Plant21.9492022.12山东省农业科学院蔬菜研究所ONT（~100x）、Hi-CThe gap-free potato genome assembly reveals large tandem gene clusters of agronomical importance in highly repeated genomic regions
苦楝植物药用植物基因组Plant Biotechnology Journal13.2632022.12华南农业大学植物保护学院ONT（~97X）MIG（~67X）Meliaceae genomes provide insights into wood development and limonoids biosynthesis
濒危物种Sci China Life Sci9.12022.11南方海洋科学与工程广东实验室（广州）Digital Noah’s Ark: last chance to save the endangered species
PLIN4肌病疾病Annals of Clinical and Translational Neurology5.32022.11北京大学第一医院神经内科ONTSubsarcolemmal and cytoplasmic p62 positivity and rimmed vacuoles are distinctive for PLIN4-myopathy
四川金粟兰植物草本基因组Nature Communications17.6942022.11兰州大学刘建全团队PacBio（~85.2×）、Hi-C、Bionano、illumina（~187×）The Chloranthus sessilifolius genome provides insight into early diversification of angiosperms
家蚕动物昆虫泛基因组Nature Communications17.6942022.09西南大学ONT（~62X）、illumina（~56X）、Bionano（~300X）High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation
豌豆植物农作物泛基因组Nature Genetics41.3072022.09中国农业科学院作物科学研究所PacBio（~250×）Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics
中华绒螯蟹动物甲壳动物基因组Science Advances14.9572022.09上海海洋大学水产养殖工程研究中心ONT（~122×）、Hi-C、illumina（~116×）“Omics” data unveil early molecular response underlying limb regeneration in the Chinese mitten crab, Eriocheir sinensis
草果植物药用植物基因组Horticulture Research7.2912022.09华南农业大学自然资源与环境学院ONT（~75.17×）、Hi-CChromosome-level genome assembly of Amomum tsao-ko provides insights into the biosynthesis of flavor compounds
拟南芥植物其他植物基因组、SVThe Plant Journal7.0912022.09中国农业科学院深圳农业基因组研究所PacBio（~130×）、Hi-C、Bionano、illuminaLong-read sequencing characterizes mitochondrial and plastid genome variants in Arabidopsis msh1 mutants
阳春砂植物药用植物基因组The Plant Journal7.0912022.09广州中医药大学药学院ONT、Hi-C、Bionano、illuminaChromosome-level genome assembly and functional characterization of terpene synthases provide new insights into the volatile terpenoid biosynthesis of Wurfbainia villosa
红花槭植物树木基因组Plant Physiology and Biochemistry5.4372022.09安徽省农业科学院农业工程研究所BicBio（~132X）、illumina（~79X）、Hic（~84X）、Bionano（~255X）The chromosome-scale genome provides insights into pigmentation in Acer rubrum
SARS-CoV-2微生物基因组Cell Discov38.0792022.08北京大学生命科学学院蛋白质与植物基因研究国家重点实验室Author Correction: Integrated characterization of SARS-CoV-2 genome, microbiome, antibiotic resistance and host response from single throat swabs
绵羊动物饲养动物基因组Genome Research9.4382022.08中国农业大学动物科学技术学院ONT（∼146×）、Hi-C (∼310×)、10X Genomics(∼170×)、 Illumina（∼110×）Genomic analyses of Pamir argali, Tibetan sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
蝴蝶动物昆虫重测序Cell66.852022.08北京大学生命科学学院蛋白质与植物基因研究国家重点实验室The evolution and diversification of oakleaf butterflies
大麦植物农作物基因组Plant Biotechnology Journal13.2632022.08长江大学PacBio（＞100×）、 BioNano、Hi-C（~372x）、illuminaGenome architecture and diverged selection shaping pattern of genomic differentiation in wild barley
鼠尾草植物草本基因组Cell Reports9.9952022.08上海植物研究所植物分子遗传学国家重点实验室illumina(~11.95x) The Sage Genome Provides Insight into the Evolutionary Dynamics of Diterpene Biosynthesis Gene Cluster in Plants
薯蓣植物藤本基因组Horticulture Research7.2912022.08武汉大学生命科学学院杂交水稻国家重点实验室ONT ultra-long（ ~100×）、Hi-C（~100x）、illumina（~60x）The genome of Dioscorea zingiberensis sheds light on the biosynthesis, origin and evolution of the medicinally important diosgenin saponins 
水稻植物农作物泛基因组Cell Research46.2972022.07中国农业科学院深圳农业基因组研究所ONT（  98 ± 24×）、Hi-C、illumina（~ 64 ± 9×）A super pan-genomic landscape of rice
燕麦植物农作物基因组Nature Genetics41.3072022.07四川农业大学西南地区作物基因探索与利用国家重点实验室PacBio（~20×）、ONT、Hi-C（~105×）、illuminaReference genome assemblies reveal the origin and evolution of allohexaploid oat
谷子植物农作物基因组Molecular Plant21.9492022.07山西农业大学生命科学学院小作物种质创新与分子育种山西省重点实验室PacBio（~55.9×）、ONT 超长（~57.1x）、Hi-C（~110×）、illumina（~36.6×）、BionanoMulti-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits and anti-inflammatory effects
闽楠植物树木基因组Plant Communications8.6252022.07浙江农林大学林业与生物技术学院亚热带造林国家重点实验室PacBio HiFi、ONT 超长、illuminaThe chromosome-scale genome of Phoebe bournei reveals contrasting fates of terpene synthase (TPS)-a and TPS-b subfamilies
肠道微生物微生物肠道微生物宏基因组、SVNature Communications17.6942022.06中国科学院微生物研究所ONTShort- and long-read metagenomics expand individualized structural variations in gut microbiomes
甘蔗植物农作物基因组Nature Genetics41.3072022.06福建农林大学生命科学学院甘蔗国家工程研究中心ONT, PacBio HiFi, and Illumina Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum
西瓜植物农作物T2TMolecular Plant21.9492022.06山东省潍坊市高级农业科学实验室PacBio（~30×）、ONT ultra-long（~50x）、Hi-C（~100x）、illumina（~1x）A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding
拟南芥植物其他植物T2TMolecular Plant21.9492022.06植物基因组学国家重点实验室和国家植物基因研究中心PacBio(~160×) 、ONT 超长、Hi-C(~135×)、illumina(~60×)A near-complete assembly of an Arabidopsis thaliana genome
马铃薯植物农作物基因组Molecular Plant21.9492022.06中国农业科学院深圳农业基因组研究所Genome architecture and tetrasomic inheritance of autotetraploid potato
广藿香植物药用植物基因组Nature Communications17.6942022.06广州中医药大学药学院药用植物生理生态研究所PacBio (~100×) 、illumina (~40×)、  Bionano (~126×)Chromosome-level and haplotype-resolved genome provides insight into the tetraploid hybrid origin of patchouli
水稻植物农作物T2TPlant Biotechnology Journal13.2632022.06北京大学高级农业科学学院和生命科学学院ONT超长（~90× 和 56×）、Hi-C、illuminaThe telomere-to-telomere gap-free genome of four rice parents reveals SV and PAV patterns in hybrid rice breeding
水稻植物农作物泛基因组Genome Research9.4382022.06上海交通大学生命科学技术学院ONT（~68.71×）、Hi-C、illumina（~69.04×）Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes
人类遗传病人全基因组Frontiers in Genetics4.7722022.05中南大学湘雅医院神经内科PacBio、ONTProfiling the Genome-Wide Landscape of Short Tandem Repeats by Long-Read Sequencing
毒蘑菇微生物真菌PNAS12.7792022.05昆明植物所Nanopore（~74x）、Illumina（~220x）、Hi-C（~100x）Genes and evolutionary fates of the amanitin biosynthesis pathway in poisonous mushrooms
人类基因组基因组、SVFront Cell Dev Biol6.0812022.04北京大学人民医院乳腺外科PacBioDetection of Structural Variations and Fusion Genes in Breast Cancer Samples Using Third-Generation Sequencing
番木瓜植物乔木基因组Nature Genetics41.3072022.04福建农林大学Nanopore（~100x）、MGI、Illumina、Hi-C（~45x）SunUp and Sunset genomes revealed impact of particle bombardment mediated transformation and domestication history in papaya
苏铁植物树木基因组Nature Plants17.3522022.04中国深圳华大基因农业基因组学国家重点实验室PacBio（∼54× coverage）、illumina、Hi-CThe Cycas genome and the early evolution of seed plants
飞蛙动物两栖动物基因组PNAS12.7792022.04中国科学院成都生物研究所Nanopore（~74x  1D reads，~32x Ultra Long reads）、Hi-C（~100x）、BioNano（~150x）Genomic adaptations for arboreal locomotion in Asian flying treefrogs
落叶松植物树木基因组JIPB|Journal of Integrative Plant Biology9.1062022.04中国林业科学院树木遗传育种国家重点实验室Nanopore（~78x）、Illumina（~73x）、Hi-C（~160x）The Larix kaempferi genome reveals new insights into wood properties
象腿蕉植物乔木基因组GigaScience7.6582022.04广东省应用植物学重点实验室Nanopore（~95x）、Illumina（~63x）、Hi-C（~128x）A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae
康乃馨植物花卉基因组Plant Biotechnology Journal13.2632022.03华中农业大学园艺与林业科学学院园艺植物生物学重点实验室Nanopore、Illumina和Hi-CIntegrated multi-omic data and analyses reveal the pathways underlying key ornamental traits in carnation flowers
象草植物草本基因组Molecular Ecology Resources8.6782022.03生物材料与绿色造纸国家重点实验室Nanopore、Hi-C和IlluminaChromosome-scale genome assembly provides insights into speciation of allotetraploid and massive biomass accumulation of elephant grass (Pennisetum purpureum Schum.)
油茶植物树木基因组The Plant Journal7.0912022.03中南林业科技大学教育部非木材林木培育与保护重点实验室ONT超长测序、Pacbio HiFI、Hi-CChromosome-level genome of Camellia lanceoleosa provides a valuable resource for understanding genome evolution and self-incompatibility
病毒微生物Virol Sin6.9472021.12武汉病毒研究所ONTCorrection to: Rapid Acquisition of High-Quality SARS-CoV-2 Genome via Amplicon-Oxford Nanopore Sequencing
猪动物家畜基因组Molecular Ecology Resources7.72021.11湖南农业大学Oxford Nanopore (108×) 、Illumina (134×)、10× Genomics、BioNano、Hi-CLong-read assembly of the Chinese indigenous Ningxiang pig genome and identification of genetic variations in fat metabolismamong different breeds
椰子植物树木基因组Genome Biology17.9062021.11海南省崖州湾种子实验室、海南大学Illumina、Nanopore和Hi-CHigh-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height 
泥土微生物宏基因组Microbiome16.8372021.1香港大学环境微生物工程与生物技术实验室Illumina、ONTCharting the complexity of the activated sludge microbiome through a hybrid sequencing strategy
拟南芥植物其他植物T2TGPB2021.09西安交通大学叶凯PacBio、Bionano、Hi-CHigh-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads
百岁兰植物草本基因组Nature Communications17.6942021.07中国科学院武汉植物园ONT(88X)、illumina、Hi-CThe Welwitschia genome reveals unique biology underpinning extreme longevity in deserts
波纹唇鱼动物鱼类基因组Molecular Ecology Resources8.6782021.05上海大学海洋动物分类学与进化重点实验室ONT、illuminaChromosome-level genome assembly of the endangered humphead wrasse Cheilinus undulatus: Insight into the expansion of opsin genes in fishes
DMD基因Front Genet4.7722021.04中国医学科学院北京协和医院神经内科Sequence and Structure Characteristics of 22 Deletion Breakpoints in Intron 44 of the DMD Gene Based on Long-Read Sequencing
人类疾病人类SVGenomics Proteomics Bioinformatics6.0492021.03华大基因青岛，华大基因深圳PacBio、Bionano、ONTRobust Benchmark Structural Variant Calls of An Asian Using State-of-the-art Long-read Sequencing Technologies
技术Nat Commun17.6942021.01中山大学中山眼科中心眼科国家重点实验室NanoporeEfficient assembly of nanopore reads via highly accurate and intact error correction
牦牛动物哺乳动物基因组Molecular Biology and Evolution8.82021刘建全团队Nanopore、HiSeq X Ten、Hi-CStructural Variants Selected during Yak Domestication Inferred from Long-Read Whole-Genome Sequencing
SARS-CoV-2微生物病毒基因组Virologica Sinica6.9472021中国科学院生物安全大科学中心武汉病毒研究所Pacbio Iso-Seq、Illumina、NanoporeRapid Acquisition of High-Quality SARS-CoV-2 Genome via AmpliconOxford Nanopore Sequencing
小鼠和人类精子细胞动物精子精子完整Long RNAsNature Communications12.1212021美国罗切斯特大学李鑫团队与爱荷华大学（现俄亥俄州立大学）区健辉团队Nanopore、MGISEQ-2000、Hi-CSingle-molecule long-read sequencing reveals a conserved intact long RNA profile in sperm
两种真骨鱼（sailfish and swordfish）动物真骨鱼基因组Molecular Biology and Evolution11.0622021国科学院深海科学与工程研究、西北工业大学PacBio、Hi-C、IlluminaThe Genomes of Two Billfishes Provide Insights into the Evolution of Endothermy in Teleosts
蚯蚓动物无脊椎动物基因组Nature子刊Communications Biology7.3962021中国农业大学资源与环境学院孙振钧教授课题组Nanopore、Hi-CAmynthas corticis genome reveals molecular mechanisms behind global distribution
非洲肺鱼动物鱼类基因组Cell38.6372021西北工业大学生态与环境学院Nanopore、单细胞African lungfish genome sheds light on the vertebrate water-to-land transition
澳洲肺鱼动物鱼类基因组Nature42.7782021德国康斯坦茨大学生物系、德国维尔茨堡大学生物中心等Nanopore1D、BioNano和Hi-CGiant lungfish genomeelucidates the conquest of land by vertebrates
花椰菜植物蔬菜基因组BMC Biology7.3642021北京农林科学院蔬菜国家工程研究中心Nanopore1D 、Ultra long和Hi-CGenome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification
毛榛植物树木基因组Horticulture Research5.4042021刘建全团队PacBio 、Illumina/Hi-CThe Corylus mandshurica genome provides insights into the evolution of Betulaceae genomes and hazelnut breeding
百香果植物作物基因组Horticulture Research5.4042021中国热带农业科学院海口实验站PacBio 、IlluminaChromosome-scale genome assembly provides insights into the evolution and flavor synthesis of passion fruit (Passiflora edulis Sims
峨眉锥栗植物树木基因组Nature Communications12.1212020.7西双版纳植物园Genomic basis of homoploid hybrid speciation within chestnut trees
LAMP新冠检测流程医学其他新冠检测bioRxiv–2020.6希望组PacBioRapid detection of SARS-CoV-2 and other respiratory viruses by using LAMP method with Nanopore Flongle workflow
新冠患者单细胞医学细胞免疫新冠病毒Cell Discovery6.2552020.5第二军医大学国家肝癌研究中心PacBioImmune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing
眼咽远端型肌病医学GGC重复眼咽远端型肌病American Journal of Human Genetics10.5022020.5北大第一医院神经内科PacBio sequencing and the Hi‐C technologyExpansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy
多鳞白甲鱼动物鱼类基因组Molecular Ecology Resources6.2862020.5西南大学生命科学学院Chromosome-level genome assembly of a cyprinid fish Onychostoma macrolepis by integration of Nanopore Sequencing, Bionano and Hi-C technology
红鲫动物鱼类基因组Science Advances13.1162020.5云南大学Illumina and Nanopore and BionanoFrom asymmetrical to balanced genomicdiversification during rediploidization: subgenomic evolution in allotetraploidfish
蚯蚓动物其他动物基因组单细胞转录组Nature Communications12.1212020.5中国科学院昆明动物研究所Nanopore, Illumina, and Hi-C sequencingGenome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration
镰刀菌菌株Fo47微生物真菌基因组bioRxiv–2020.5西安交通大学生命科学与技术学院PacBio、Hi-C、IlluminaChromosome-scale genome assembly of Fusarium oxysporum strain Fo47, a fungal endophyte and biocontrol agent
Stain R3-44T微生物细菌基因组International Journal of Systematic and Evolutionary Microbiology #N/A2020.5武汉大学生命科学学院NanoporeChitinimonas arctica sp. nov., isolated from Arctic tundra soil
光果甘草植物药用植物二代转录组Bioorganic & Medicinal Chemistry Letters2.5722020.5北京中医药大学生命科学学院Illumina 、Oxford Nanopore)RNA-Seq based transcriptome analysis reveals the molecular mechanism of triterpenoid biosynthesis in Glycyrrhiza glabra
杨树植物树木基因组bioRxiv–2020.4四川大学生命科学学院Nanopore, Illumina,Hi-CA general model to explain repeated turnovers of sex determination in the Salicaceae
花生植物农作物QTL定位#N/A2020.4福建农林大学NanoporeHigh‑density SNP map facilitates fne mapping of QTLs and candidate genes discovery for Aspergillus favus resistance in peanut (Arachis hypogaea)
草棉、亚洲棉、陆地棉植物农作物基因组Nature Genetics27.6032020.4武汉大学高等研究院单细胞测序Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
松江鲈鱼动物鱼类基因组bioRxiv–2020.4南通大学NanoporeDe novo assembly of trachidermus fasciatus genome by nanopore sequencing
炭疽菌微生物细菌基因组Molecular Plant-Microbe Interactions3.6962020.4西北农林科技大学IlluminaHighly Contiguous Genome Resource of Colletotrichum fructicola Generated Using Long-Read Sequencing
马尾松毛虫昆虫昆虫类基因组Molecular Ecology Resources6.2862020.4中国林业科学研究院森林生态环境与保护研究所Nanopore, Illumina,Bionano，Hi-C Chromosome-level genome assembly of an important pine defoliator,Dendrolimus punctatus (Lepidoptera; Lasiocampidae)
油菜植物农作物全长转录组Plant Journal6.1412020.4中国农业科学院油料作物研究所PacBio、BionanoA global survey of the transcriptome of the allopolyploid Brassica napus based on single molecule long‐read isoform sequencing and Illumina‐based RNA‐seq data
望春玉兰植物树木线粒体基因组PLoS one2.742020.4中国科学院深圳仙湖植物园PacBio RS IIThe draft mitochondrial genome of Magnolia biondii and mitochondrial phylogenomics of angiosperms
先天性运动眼球震颤医学结构变异先天性运动眼球震颤Human Genetics5.7432020.3中山大学眼科中心PacBio、Illumina、Hi-C Structural variations in a non‑coding region at 1q32.1 are responsible for the NYS7 locus in two large families
strain MK6-18T微生物细菌基因组International Journal of Systematic and Evolutionary Microbiology #N/A2020.3武汉大学生命科学学院PacBioRoseovarius arcticus sp. nov., a bacterium isolated from Arctic
marine sediment
白粉虱昆虫昆虫类基因组Molecular Ecology Resources6.2862020.3中国农业科学院蔬菜花卉研究所IlluminaChromosome‐level genome assembly of the greenhouse whitefly (Trialeurodes vaporariorum Westwood)
罗非鱼动物鱼类基因组bioRxiv–2020.3西南大学淡水鱼繁殖与发育重点实验室NanoporeHigh-quality chromosome-level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes
黑尾近红鲌动物鱼类基因组Molecular Ecology Resources6.2862020.3九江学院药学与生命科学学院NanoporeHigh‐quality genome assembly and transcriptome of
Ancherythroculter nigrocauda, an endemic Chinese cyprinid species  
大肠杆菌微生物细菌质粒耐药性Antimicrobial Agents and Chemotherapy4.9042020.3华南农业大学兽医学院动物源菌耐药性国家风险评估实验室NanoporeCo-occurrence of plasmid-mediated tigecycline and carbapenem resistance in Acinetobacter spp. from waterfowls and their neighboring environment.
巨尾阿丽蝇昆虫昆虫类基因组GigaScience5.9932020.3中南大学基础医学院NanoporeChromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly.
油桐植物树木基因组GENOMICS PROTEOMICS & BIOINFORMATICS7.0512020.3中南林业科技大学非木质林木培育与保护重点实验室PacBio RSII, Hi-C,Tung Tree (Vernicia fordii) Genome Provides A Resource for Understanding Genome Evolution and Improved Oil Production
沉香木植物树木基因组GigaScience5.9932020.3热带生物科学与生物技术研究所海南沉香工程研究中心PacBio iso-SeqGenome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family
文竹植物花卉基因组Horticulture Research5.4042020.3河南师范大学生命科学学院PacBio+Hi-CChromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant Asparagus setaceus
芡实和金鱼藻植物被子植物基因组Nature Plants13.2562020.2四川大学的杨勇志、华北理工大学NanoporePrickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution
角苔植物苔藓植物基因组Nature Plants13.2562020.2中国科学院植物研究所、福建农林大学、深圳仙湖植物园IlluminaThe hornwort genome and early land plant evolution
NECAT其他其他NECAT算法bioRxiv–2020.2中山大学中山眼科中心PacBio+Hi-CFast and accurate assembly of Nanopore reads via progressive error correction and adaptive read selection
Stain AQ6-296T微生物细菌基因组International Journal of Systematic and Evolutionary Microbiology #N/A2020.2武汉大学生命科学学院Nanopore、Illumina、Hi-CPseudolysobacter antarcticus gen. nov., sp. nov., isolated from soil in Fildes Peninsula, Antarctica
人肠道乳酸链球菌微生物肠道微生物基因组Frontiers in Genetics3.2582020.2南方医科大学Nanopore、Illumina、10×Genomics、Hi-CComplete Genome Insights into Lactococcus petauri CF11 Isolated from a Healthy Human Gut Using Second- and Third-Generation Sequencing
水稻基因组比较植物农作物基因组bioRxiv–2020.1武汉未来组PacBio+Hi-CComparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacbio Sequel II system and ultralong reads of Oxford Nanopore
基因分型医学方法基因分型Journal of Thrombosis and Thrombolysis2.0542020.1华中科技大学同济医学院Nanopore+Hi-CRapid genotyping of F8 intron 22 inversion by nested PCR based on long‑distance PCR
染色体平衡易位医学平衡易位染色体平衡易位Frontiers in Genetics3.2582020.1中南大学基础医学院生殖与干细胞工程研究所PacBio+Hi-CLocation of Balanced Chromosome-Translocation Breakpoints by Long-Read Sequencing on the Oxford Nanopore Platform
非洲猪瘟病毒微生物病毒甲基化Virologica Sinica3.2422020.1中国科学院武汉病毒学研究所Potential m6A and m5C Methylations within the Genome of A Chinese
African Swine Fever Virus Strain
中华绒螯蟹动物甲壳动物基因组Frontiers in Genetics3.2582020.1江苏省盐碱地生物资源重点实验室PacBio+Hi-CHigh-Quality Genome Assembly of Eriocheir japonica sinensis Reveals Its Unique Genome Evolution
多耐药铜绿假单胞菌微生物细菌基因组Scientific Reports3.9982020.1哥斯达黎加大学NanoporeHigh quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers
三疣梭子蟹动物爬行动物基因组GigaScience5.9932020.1江苏省盐碱地生物资源重点实验室PacBioChromosome-level genome assembly reveals the unique genome evolution of the swimming crab (Portunus trituberculatus)
菲牛蛭动物其他动物基因组Frontiers in Genetics3.2582020.1陕西师范大学PacBioDraft Genome of the Asian Buffalo Leech Hirudinaria manillensis.
圆点斑芫菁昆虫昆虫类基因组Frontiers in Genetics3.2582020.1陕西师范大学Nanopore、Illumina、Hi-CDraft Genome of a Blister Beetle Mylabris aulica.
strain W43T微生物细菌基因组FEMS Microbiology Letters1.9872020.1上海海洋大学illumina,NanoporePolyphasic taxonomic analysis of Parasedimentitalea marina gen. nov., sp. nov., a psychrotolerant bacterium isolated from deep sea water of the New Britain Trench
象草植物草本基因组Molecular Ecology Resources6.2862020.1齐鲁理工大学生物工程学院PacBioChromosome-Scale Genome Assembly Provides Insights into Speciation of Allotetraploid and Massive Biomass Accumulation of Elephant Grass (Pennisetum purpureum Schum.)
胡桃植物树木基因组GigaScience5.9932020.1中南林业科技大学NanoporeChromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
草棉、亚洲棉、陆地棉植物作物基因组Nature Genetics25.4552020武汉大学高等研究院NanoporeGenome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
单细胞技术单细胞单细胞研究技术方法Plos Biology7.0762020汤富酬课题组NanoporeSingle-cell RNA-seq analysis of mouse preimplantation embryos by third-generation sequencing
白粉虱动物昆虫类基因组Molecular Ecology Resources7.0492020中国农业科学院蔬菜花卉研究所蔬菜虫害防控创新团队和美国康奈尔大学BTINanoporeChromosome-level genome assembly of the greenhousewhitefly (Trialeurodes vaporariorum Westwood)
Streptomyces lividans微生物霉菌基因组Nature Microbiology14.32020武汉大学药学院Nanopore, BioNano, and Hi-CSspABCD–SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities
马尾松毛虫动物昆虫类基因组Molecular Ecology Resources7.0492020中国林业科学研究院森林生态环境与保护研究所Nanopore,  ultra-long reads,BioNano, and Hi-CChromosome-level genome assembly of an important pine defoliator, Dendrolimus punctatus (Lepidoptera; Lasiocampidae)
白粉虱动物昆虫类基因组Molecular Ecology Resources7.0492020中国农业科学院蔬菜花卉研究所Nanopore+Hi-CChromosome‐level genome assembly of the greenhouse whitefly (Trialeurodes vaporariorum Westwood)
黑尾近红鲌动物鱼类基因组Molecular Ecology Resources7.0492020九江学院PacBio、NanoporeHigh‐quality genome assembly and transcriptome of Ancherythroculter nigrocauda, an endemic Chinese cyprinid species
大肠杆菌微生物微生物基因组Antimicrobial Agents and Chemotherapy4.7152020华南农业大学NanoporeCo-occurrence of plasmid-mediated tigecycline and carbapenem resistance in Acinetobacter spp. from waterfowls and their neighboring environment.
巨尾阿丽蝇动物昆虫类基因组GigaScience4.6882020中南大学基础医学院NanoporeChromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly.
硫杆菌-YNTRS-40微生物微生物基因组Microorganisms4.1672020黑龙江八一农业大学NanoporeComplete Genome Sequence of Acidithiobacillus ferrooxidans YNTRS-40, a Strain of the Ferrous Iron- and Sulfur-Oxidizing Acidophile
多耐药铜绿假单胞菌微生物微生物基因组Scientific Reports4.1222020哥斯达黎加大学Illumina High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers
阿尔波特综合征医学遗传病阿尔波特综合征Kidney Diseases3.1112020南京大学医学院PacBioA Novel COL4A5 Splicing Mutation Causes Skipping of Exon 14 in a Chinese Family with Alport Syndrome
遗传性肾病医学遗传病常染色体显性遗传性小管间质肾病Scientific Reports3.9982020北京安贞医院IlluminaSMRt sequencing revealed to be an effective method for ADTKDMUC1 diagnosis through follow-up analysis of a Chinese family
JXY1微生物细菌细菌防御系统Nature Microbiology15.542020武汉大学药学院IlluminaSspABCD–SspE is a phosphorothioation-sensing
bacterial defence system with broad anti-phage
activities
链霉菌-N1-32 微生物细菌基因组Fish & Shellfish Immunology–2020湖南师范大学生命科学学院IlluminaIsolating a new Streptomyces amritsarensis N1-32 against fish pathogens and determining its effects on disease resistance of grass carp
硫杆菌-YNTRS-40微生物细菌基因组Microorganisms4.1522020黑龙江八一农业大学生命科学与生物技术学院IlluminaComplete Genome Sequence of Acidithiobacillus ferrooxidans YNTRS-40, a Strain of the Ferrous Iron- and Sulfur-Oxidizing Acidophile
SCAWS-G2T微生物细菌基因组International Journal of Systematic and Evolutionary Microbiology #N/A2020中国科学院微生物研究所IlluminaKtedonosporobacter rubrisoli gen. nov., sp. nov., a novel representative of the class Ktedonobacteria, isolated from red soil, and proposal of Ktedonosporobacteraceae fam. nov.
strain SNB6微生物细菌基因组Journal of Hazardous Materials9.0382020四川大学自然科学学院NanoporeInsight into the mechanisms of plant growth promoting strain SNB6 on enhancing the phytoextraction in cadmium contaminated soil
放线菌微生物细菌基因组Extremophiles2.4622020华南师范大学PacBioComparative genomics analysis of Nitriliruptoria reveals the genomic
differences and salt adaptation strategies
胡桃植物树木基因组GigaScience4.6882020中南林业科技大学NanoporeChromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
沉香木植物树木基因组GigaScience4.6882020中国热带农业科学院热带生物技术研究所NanoporeGenome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family
杉木植物树木基因组调研Scientific Reports3.9982020浙江农林大学林业与生物技术学院生物技术研究所PacBioGenome survey of Chinese fir (Cunninghamia lanceolata): Identification of genomic SSRs and demonstration of their utility in genetic diversity analysis
水稻植物农作物二代转录组Plant Cell Reports3.8252020安徽农业大学生命科学学院PacBioMaize WRKY114 gene negatively regulates salt‑stress tolerance in transgenic rice
莲植物被子植物群体研究BMC Genomics3.5942020武汉大学生命科学学院NanoporeComparative population genomics reveals genetic divergence and selection in lotus, Nelumbo nucifera
水稻植物农作物线粒体基因组BMC Plant Biology3.4972020武汉大学生命科学学院PacBio RSIIWide crossing diversify mitogenomes of
rice
樱桃植物树木比较转录组BMC Plant Biology3.4972020贵州大学农业生物工程研究所Comparative transcriptome analysis reveals the molecular regulation underlying the adaptive mechanism of cherry (Cerasus pseudocerasus Lindl.) to shelter covering
甘草植物药用植物二代转录组Plant Growth Regulation2.3882020北京中医药大学生命科学学院Identification of biosynthetic pathways involved in flavonoid production in licorice by RNA-seq based transcriptome analysis
桂花植物树木基因功能Forests2.2212020南京林业大学风景园林学院Genome-Wide Identification of the Auxin Response Factor (ARF) Gene Family and Their Expression Analysis during Flower Development of Osmanthus fragrans
大肠杆菌微生物细菌质粒耐药性Journal of Antimicrobial Chemotherapy5.4392019.9华南农业大学兽医学院动物源菌耐药性国家风险评估实验室PacBio+Bionano+Hi-CDetection of chromosome-mediated tet(X4)-carrying Aeromonas caviae in a sewage sample from a chicken farm.
寄生蜂昆虫昆虫类基因功能Archives of Insect Biochemistry and Physiology1.5362019.9浙江大学昆虫科学研究所PacBioGenome-wide characterization and transcriptomic analyses of neuropeptides and their receptors in an endoparasitoid wasp, Pteromalus puparum
鲤鱼-金鱼动物鱼类转录组Genes3.7592019.9华中农业大学水产学院Genetic Characteristic and RNA-Seq Analysis in Transparent Mutant of Carp–Goldfish Nucleocytoplasmic Hybrid
恒河猴动物哺乳动物基因组Nature Communications12.1212019.9中国科学院昆明动物所PacBioLong-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants
黄芩植物药用植物转录组International Journal of Molecular Sciences4.5562019.9青岛农业大学生命科学学院与中国医学科学院药用植物研究所Nanopore+Hi-CHybrid Sequencing of Full-Length cDNA Transcripts of the Medicinal Plant Scutellaria baicalensis
钩吻（断肠草）植物药用植物基因组Acta Pharmaceutica Sinica B7.0972019.8湖南农业大学动物医学院，湖南省兽药工程技术研究中心Nanopore+Illumina+Hi-CWhole-genome sequencing and analysis of the Chinese herbal plant Gelsemium elegans
大肠杆菌微生物细菌质粒耐药性Emerging Microbes & Infections5.7762019.8华南农业大学兽医学院动物源菌耐药性国家风险评估实验室Emergence of mobile tigecycline resistance mechanism in Escherichia coli strains from migratory birds in China.
牡丹植物花卉转录组BMC Genomics3.5942019.8北京市观赏植物重点实验室NanoporeComparative transcriptome and coexpression network analysis of carpel quantitative variation in Paeonia rockii
2019.07Simultaneous Photoacoustic Imaging and Cavitation Mapping in Shockwave Lithotripsy
赤点石斑鱼动物鱼类基因组Molecular Ecology Resources6.2862019.7福建省水产科学研究院NanoporeDe Novo Assembly of a Chromosome-Level Reference Genome of Red Spotted Grouper (Epinephelus akaara) Using Nanopore Sequencing and Hi-C
戊糖片球菌微生物细菌16SFrontiers in Microbiology4.2352019.6湖南师范大学生命科学学院NanoporeA New Isolate of Pediococcus pentosaceus (SL001) with Antibacterial Activity Against Fish Pathogens and Potency in Facilitating the Immunity and Growth
DeepMod其他技术甲基化Nature Communications12.1212019.6费城儿童医院、中山大学中山眼科中心PacBioDetection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data
大肠杆菌微生物细菌质粒耐药基因Nature Microbiology15.542019.6华南农业大学兽医学院PacBio、IlluminaPlasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli
酵母微生物真菌染色质调控Genome Research11.0932019.6美国俄亥俄州立大学100x PacBio+Hi-C+Single-molecule long-read sequencing reveals the chromatin basis of gene expression
花生植物农作物基因组Nature genetics27.6032019.5福建农林大学PacBio Iso-SeqThe genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication
豆瓣菜植物被子植物叶绿体基因组Gene2.9842019.5南京农业大学5’-Cap捕获+Nanopore Direct RNA-SeqThe complete chloroplast genome sequence of watercress (Nasturtium officinale R. Br.): Genome organization, adaptive evolution and phylogenetic relationships in Cardamineae
毛白杨植物树木叶绿体基因组Mitochondrial DNA Part B-Resources0.8852019.5 MHS，总共55Gb的PacBio+671Gb的Illumina 684Mb，N50 418KbThe complete chloroplast genome of Populus tomentosa narrow crown, native to Northern China
苹果植物树木基因组Nature Communications12.1212019.4中国农业科学院果树研究所PacBio~117× + Bionano~224×+ Hi-C145×基因组大小658.90 Mb，17条染色体,contig N50 of 6.99 MbA high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour
凡纳滨对虾动物鱼类全长转录组Fish & Shellfish Immunology–2019.4广东省动物保护与资源利用重点实验室Full-length transcriptome analysis of Litopenaeus vannamei reveals transcript variants involved in the innate immune system
蝗虫昆虫昆虫类Direct RNARNA Biology5.352019.4中国科学院北京生命科学研究院、动物研究所及中国科学院大学Long-read direct RNA sequencing by 5’-Cap capturing reveals the impact of Piwi on the widespread exonization of transposable elements in locusts
狮子鱼动物鱼类基因组Nature ecology & evolution12.5412019.4中科院深海科学与工程研究所，水生生物研究所以及西北工业大学生态与环境保护研究中心NextPolishMorphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation
中华绒螯蟹肠道微生物微生物宏基因组肠道微生物Microbiologyopen3.1422019.3南京农业大学无锡渔业学院NanoporeChange in the intestinal bacterial community structure associated with environmental microorganisms during the growth of Eriocheir sinensis.
橡胶植物树木基因家族Frontiers in Genetics3.2582019.3农业部橡胶树生物学与遗传资源重点实验室PacBio+Hi-CGenome-Wide Identification and Characterization of the JAZ Gene Family in Rubber Tree (Hevea brasiliensis)
西瓜植物农作物基因组Nature Genetics27.6032019.11北京市农林科学院、中国农科院郑州果树所PacBio+Bionano+Hi-CResequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits
NextPolish其他方法算法Bioinformatics5.612019.11未来组PacBioNextPolish: a fast and efficient genome polishing tool for long read assembly.
非洲猪瘟病毒微生物病毒基因组Science China-Life Sciences4.6112019.11中国科学院武汉病毒研究所PacBio+Hi-CNanopore sequencing of African swine fever virus
碧凤蝶昆虫昆虫类基因组GigaScience5.9932019.11中国科学院昆明动物研究所Chromosomal-level reference genome of Chinese peacock butterfly (Papilio bianor)based
棉花植物农作物转录组Nature Communications12.1212019.1武汉大学生命科学学院PacBio Iso-SeqMulti-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton
糜子植物农作物基因组Nature Communications12.1212019.1中国农业大学PacBio ~150.7 Gb+BioNano ~235 ×+Hi-C，~116 ×Illumina进行polish，18个 super scaffolds，覆盖~95.6%的基因组Chromosome conformation capture resolved near complete genome assembly of broomcorn millet
高原鳅动物鱼类基因组Frontiers in Genetics3.2582019.1中国科学院水生生物研究所BionanoA Chromosome-Scale Reference Assembly of a Tibetan Loach, Triplophysa siluroides.
寄生蜂昆虫昆虫类基因功能Archives of Insect Biochemistry and Physiology1.5362019.1浙江大学昆虫科学研究所Illumina Biogenic amine biosynthetic and transduction genes in the endoparasitoid wasp Pteromalus puparum (Hymenoptera: Pteromalidae).
沙柳植物树木叶绿体基因组Mitochondrial DNA Part B-Resources0.8852019.1南京林业大学NanoporeThe complete chloroplast genome and phylogenetic analysis of Salix triandra from China
槿麻植物被子植物线粒体基因组bioRxiv–2019广西大学农学院NanoporeComparative analysis of mitochondrial genome between UG93A and UG93B reveal common feature of 5’-end heterogeneity in mitochondrial genes of kenaf
玉米植物农作物基因功能bioRxiv–2019华中农业大学NanoporeqKW9 encodes a pentatricopeptide repeat protein affecting photosynthesis and grain filling in maize
FSHD医学面肩肱FSHDJournal of Medical Genetics4.9432019中国医学科学院北京协和医院神经内科NanoporeSingle-molecule optical mapping enables accurate molecular diagnosis of facioscapulohumeral muscular dystrophy (FSHD)
空卵泡综合征医学细胞免疫空卵泡综合征Human Reproduction5.7332019湖南师范大学医学院基础医学部IlluminaZP1 mutations are associated with empty follicle syndrome: evidence for the existence of an intact oocyte and a zona pellucida in follicles up to the early antral stage. A case report
神经核内包涵体疾病医学5’UTR重复扩增神经核内包涵体疾病Journal of Medical Genetics4.9432019北京大学第一医院神经内科IlluminaLong-read sequencing identified repeat expansions in the 5′UTR of the NOTCH2NLC gene from Chinese patients with neuronal intranuclear inclusion disease
特发性震颤医学GGC重复特发性震颤Brain11.3372019中南大学湘雅医院IlluminaExpansion of GGC repeat in human-specific NOTCH2NLC gene is associated with Essential Tremor
结构变异医学结构变异结构变异Journal of Medical Genetics4.9432019复旦大学附属妇产科医院IlluminaLong-read sequencing and haplotype linkage analysis enabled preimplantation genetic testing for patients carrying pathogenic inversions
神经核内包涵体疾病医学GGC重复神经核内包涵体疾病American Journal of Human Genetics10.5022019中南大学湘雅医院老年医学科IlluminaExpansion of Human-Specific GGC Repeat in Neuronal Intranuclear Inclusion Disease-Related Disorders
大肠杆菌微生物细菌基因组Infection and Immunity3.2012019中国农业科学院哈尔滨兽医研究所IlluminaIdentification of Host Adaptation Genes in Extraintestinal Pathogenic Escherichia coli during Infection in Different Hosts
TRPV1离子通道其他其他Nature Communications12.1212019昆明动物研究所Molecular basis for heat desensitization of TRPV1 ion channels
褐边绿刺蛾昆虫昆虫类转录组Toxins3.5312019青岛大学药学院PacBioThe Latoia consocia Caterpillar Induces Pain by Targeting Nociceptive Ion Channel TRPV1
蜜蜂肠道微生物微生物肠道微生物基因组International Journal of Systematic and Evolutionary Microbiology #N/A2019中国农业大学食品科学与营养工程学院NanoporeEntomomonas moraniae gen. nov., sp. nov., a member of the family Pseudomonadaceae isolated from Asian honey bee gut, possesses a highly reduced genome 
DeepSignal其他方法甲基化检测Bioinformatics5.612019中南大学PacBio DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning
蚯蚓动物其他动物基因组bioRxiv–2019中国农业大学PacBio+Hi-CMolecular mechanisms behind global distribution of earthworm revealed by the genome
环柄菇微生物真菌基因组BMC Genomics3.5942019中国科学院昆明植物研究所PacBio Genome of lethal Lepiota venenata and insights into the evolution of toxin-biosynthetic genes
乌鳢肠道微生物微生物肠道微生物肠道微生物Aquaculture Nutrition2.2312019浙江大学动物科学学院PacBio Effects of multienzyme complex and probiotic supplementation on the growth performance, digestive enzyme activity and gut microorganisms composition of snakehead (Channa argus)
寄生蜂昆虫昆虫类线粒体基因组International Journal of Biological Macromolecules5.1622019浙江大学昆虫科学研究所Mitochondrial DNA and their nuclear copies in the parasitic wasp Pteromalus puparum: A comparative analysis in Chalcidoidea
内生真菌微生物真菌基因组BMC Genomics3.5942019中国热带农业科学院环境与植物保护研究所PacBio Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae
Strain YZ-8T微生物细菌基因组International Journal of Systematic and Evolutionary Microbiology #N/A2019武汉大学生命科学学院PacBio Sphingomonas paeninsulae sp. nov., isolated from soil sampled at Fildes Peninsula, Antarctica Free
嗜热细菌微生物细菌基因组Antonie van Leeuwenhoek–2019中山大学PacBio Thermus caldilimi sp. nov., a thermophilic bacterium
isolated from a geothermal area
Crassaminicella 微生物细菌基因组Marine Genomics1.6722019中国科学院深海科学与工程研究所PacBioGenome analysis of Crassaminicella sp. SY095, an anaerobic mesophilic marine bacterium isolated from a deep-sea hydrothermal vent on the Southwest Indian Ridge
Deinococcus psychrotolerans sp. nov.微生物细菌基因组International Journal of Systematic and Evolutionary Microbiology #N/A2019武汉大学生命科学学院PacBio Deinococcus psychrotolerans sp. nov., isolated from soil on the South Shetland Islands, Antarctica
大肠杆菌微生物细菌基因组Microorganisms4.1522019华中农业大学PacBio Characteristics of a Colistin-Resistant Escherichia coli ST695 Harboring the Chromosomally-Encoded mcr-1 Gene
Akkermansia muciniphila Strains微生物细菌基因组Frontiers in Cellular and Infection Microbiology4.1232019上海交通大学生命科学与生物技术学院Nanopore PromethION Strain-Specific Anti-inflammatory Properties of Two Akkermansia muciniphila Strains on Chronic Colitis in Mice
牡蛎动物其他动物基因组Frontiers in Genetics3.2582019鲁东大学农学院PacBioNanopore Sequencing and De Novo Assembly of a Black-Shelled Pacific Oyster (Crassostrea gigas) Genome
昆虫线粒体昆虫其他动物线粒体基因组进化分析Molecular Biology and Evolution11.0622019浙江大学昆虫科学研究所NanoporeEvolutionary Rate Correlation between Mitochondrial-Encoded and Mitochondria-Associated Nuclear-Encoded Proteins in Insects
紫斑牡丹植物花卉转录组BMC Genomics3.5942019北京林业大学园林学院Comparative transcriptome and coexpression network analysis of carpel quantitative variation in Paeonia rockii
毛白杨植物树木叶绿体基因组PLoS one2.742019西南林业大学PacBio+BionanoComparative analysis of the complete chloroplast genomes of seven Populus species: Insights into alternative female parents of Populus tomentosa
猕猴桃植物树木转录组ROYAL SOCIETY OPEN SCIENCE2.6472019西南林业大学PacBio SMRTInduction, identification and genetics analysis of tetraploid Actinidia chinensis
蝴蝶兰植物花卉全长转录组Horticultural Plant Journal1.5242019福建农林大学生命科学学院PacBio SMRTTranscriptomic Analysis of Differentially Expressed Genes and Alternative Splicing Events Associated with Crassulacean Acid Metabolism in Orchids
玉米植物农作物基因组Nature Genetics27.6032018.7中国农业大学植物遗传育种系农业生物技术国家重点实验室和国家玉米改良中心PacBio SMRTExtensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes
人动物人类甲基化Molecular Cell15.5842018.7广州医科大学附属第三医院生物医学研究中心;中山大学中山眼科中心眼科国家重点实验室PacBio（100x）+Illumina(77x)+Hi-C，contig N50 size of 1.595 MbN6-Methyladenine DNA Modification in the Human Genome
生物处理器单元Sci China Life Sci2018.5中国科学院武汉病毒研究所Biological data processing based on bio-processor unit (BPU), a new concept for next generation computational biology
拟南芥植物其他植物甲基化Developmental Cell10.0922018.5新加坡国立大学和中国农业科学院生物技术研究所Oxford nanopore（ 39cell，平均读长17.7 kb，105.2 Gb）+Illumina（362.3 Gb），Contig N50 = 130.7 kbDNA N6-Adenine Methylationin Arabidopsis thaliana
微囊藻植物其他植物甲基化Harmful Algae3.7072018.5中国科学院水生生物研究所淡水生态与生物技术国家重点实验室NanoporeThe highly heterogeneous methylated genomes and diverse restriction-modification systems of bloom-forming Microcystis
桂花植物树木基因组Horticulture Research5.4042018.11南京林业大学Nanopore、PacBio SequelThe chromosome-level quality genome
provides insights into the evolution of the
biosynthesis genes for aroma compounds
of Osmanthus fragrans
菊花脑植物药用植物基因组Molecular Plant12.0842018.1中国医学科学院中药研究所中药鉴定与安全性评价重点实验室Illumina The Chrysanthemum nankingense genome provides insights into the evolution and
diversification of chrysanthemum flowers and medicinal traits
酵母微生物J Genet Genomics2018.04中国农业科学院生物技术研究所The N6-adenine methylation in yeast genome profiled by single-molecule technology
青稞植物农作物基因组bioRxiv–2018西藏农牧科学院Improved high-quality genome assembly and annotation of Tibetan hulless barley
小麦（不用于宣传）植物农作物基因组Nature42.7782018中国科学院遗传与发育生物学研究所植物细胞与染色体国家重点实验室的小麦基因组研究团队与遗传发育所的梁承志课题组等合作Illumina Genome sequence of the progenitor of wheat A subgenome Triticum urartu
玉米植物农作物基因功能Nature Communications12.1212018中国科学院遗传与发育生物学研究所Illumina A PECTIN METHYLESTERASE gene at the maize Ga1 locus confers male function in unilateral cross-incompatibility
水稻植物农作物二代PLANT CELL AND ENVIRONMENT6.3622018武汉大学杂交水稻国家重点实验室Illumina HiSeq2500、RT-PCROsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice
木棉植物树木基因组GigaScience5.9932018云南曲靖师范学院、西南林业大学PacBio、IlluminaDe novo genome assembly of the red silk cotton tree (Bombax ceiba)
槿麻植物草本叶绿体基因组Scientific Reports3.9982018广西大学农业学院PacBioComplete sequence of kenaf (Hibiscus cannabinus) mitochondrial genome and comparative analysis with the mitochondrial genomes of other plants
结构变异医学结构变异结构变异Hereditas2.4122018中南大学生殖与干细胞工程研究所西藏农牧科学院Long-read sequencing identified a causal structural variant in an exome-negative case and enabled preimplantation genetic diagnosis
癫痫医学癫痫癫痫Journal of Medical Genetics4.9432018中南大学湘雅医院、美国费城儿童医院PacBioLong-read sequencing identified intronic repeat expansions in SAMD12 from Chinese pedigrees affected with familial cortical myoclonic tremor with epilepsy
肾病医学其他Experimental and Therapeutic Medicine1.7852018吉林大学第一医院PacBioRecurrent primary hyperoxaluria type 2 leads to early post‑transplant renal function loss: A case report
纤毛虫微生物其他微生物数据库BMC Genomics3.5942018中国科学院水生生物研究所PacBioPseudocohnilembus persalinus genome database – the first genome database of facultative scuticociliatosis pathogens
狗牙根植物草本全长转录组Plant Physiology and Biochemistry3.722018扬州大学动物科学与技术学院PacBioFull-length RNA sequencing reveals unique transcriptome composition in bermudagrass
酵母微生物真菌转录组Frontiers in Microbiology4.2352018西南林业大学PacBioFunctional Analysis of the FZF1 Genes of Saccharomyces uvarum
Conidiobolus
heterosporus		微生物真菌线粒体基因组Applied Microbiology and Biotechnology3.532018安徽农业大学PacBioMitochondrial genome of the entomophthoroid fungus Conidiobolus
heterosporus provides insights into evolution of basal fungi
葡萄球菌微生物细菌基因组Journal of Biotechnology3.5032018浙江万里大学生物与环境科学学院PacBioComplete genome sequence of the highly Mn(II) tolerant Staphylococcus sp.AntiMn-1 isolated from deep-sea sediment in the Clarion-Clipperton Zone
鼠乳杆菌微生物细菌基因组Microbiome11.6072018上海交通大学生命科学与生物技术学院(BAC)-by-BAC+PacBio+BioNano+10x GenomicsPredominant gut Lactobacillus murinus strain mediates anti-inflammaging effects in calorie-restricted mice
石蛾昆虫昆虫类基因组GigaScience5.9932018中国农业大学植物保护学院PacBio+BionanoThe genome of an underwater architect, the caddisfly Stenopsyche tienmushanensis Hwang (Insecta: Trichoptera)
枯草芽孢杆菌微生物细菌基因组Genome Announcements–2018哈尔滨工业大学食品工程学院PacBio RS IIComplete Genome Sequence of the Poly–GlutamateSynthesizing Bacterium Bacillus subtilis Bs-115
月季植物花卉基因组、转录组BMC Plant Biology3.4972018中国农业大学PacBioGenomic and transcriptomic sequencing of Rosa hybrida provides microsatellite markers for breeding, flower trait improvement and taxonomy studies
嗜盐细菌微生物细菌基因组Extremophiles2.4622018中国科学院微生物研究所PacBio NanoporeIsolation and complete genome sequence of Halorientalis
hydrocarbonoclasticus sp. nov., a hydrocarbon‑degrading
haloarchaeon
木棉植物树木叶绿体基因组Mitochondrial DNA Part B-Resources0.8852018曲靖师范大学Illumina Complete chloroplast genome sequence of the red
silk cotton tree (Bombax ceiba)
冬虫夏草线粒体微生物其他微生物基因组及甲基化Frontiers in microbiology4.2352017.7湖南农业大学IlluminaSMRT sequencing revealed mitogenome characteristics and mitogenome-wide DNA modification pattern in Ophiocordyceps sinensis
鹅掌楸植物花卉RNA-SeqPeerJ Preprints–2017武汉植物园Hiseq 2500De novo assembly of expressed transcripts and analysis of pistil to identify genes involved in early stage of pollination in Liriodendron chinense
水稻（不用于宣传）植物农作物基因组Nature communications12.1212017中科院遗传所IlluminaSequencing and de novo assembly of a near complete indica rice genome
杜仲植物树木基因组Molecular Plant12.0842017中国林业科学研究院经济林研究开发中心IlluminaThe hardy rubber tree genome provides insights into the evolution of polyisoprene biosynthesis
棉花植物农作物全长转录组New Phytologist8.5122017华中农业大学Illumina HiSeq 2500A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation
荷植物花卉microRNAPlant Journal6.1412017武汉植物园，武汉大学PacBio RS IIThe evolution of plant microRNAs: insights from a basal eudicot sacred lotus
水稻植物农作物二代重测序Scientific Reports3.9982017武汉大学Illumina HiSeq, MiSeq，PacBio，BioNanoPedigree-based genome re-sequencing reveals genetic variation patterns of elite backbone varieties during modern rice improvement
油桐叶绿体植物树木基因组Scientific Reports3.9982017中南林业科技大学PacBio The complete chloroplast genome sequence of tung tree (Vernicia fordii): Organization and phylogenetic relationships with other angiosperms
矮牵牛（不用于宣传）植物花卉转录组Scientific Reports3.9982017华中农业大学PacBio + Hiseq Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genome
三核苷酸重复其他方法RepeatHMMGenome Medicine10.6752017哥伦比亚大学PacBioInterrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
蝶蛹金小蜂昆虫昆虫类转录组Developmental and Comparative Immunology3.1922017浙江大学昆虫科学研究所PacBioThe genomic and transcriptomic analyses of serine proteases and their homologs in an endoparasitoid, Pteromalus puparum
酵母微生物真菌转录组FEMS Yeast Research3.1932017西南林业大学Enhancing expression of SSU1 genes in Saccharomyces uvarum leads to an increase in sulfite tolerance and a transcriptome profile change
冬虫夏草线粒体微生物其他微生物线粒体基因组Gene2.9842017湖南农业大学PacBio RS IIThe mitochondrial genome of the lepidopteran host cadaver (Thitarodes sp.) of Ophiocordyceps sinensis and related phylogenetic analysis
HIFI-Barcode其他方法HIFI-BarcodeGigaScience5.9932017中国农业大学植物保护学院PacBio RS II
Illumina HiSeq & Miseq		Filling reference gaps via assembling DNA barcodes using high-throughput sequencing—moving toward barcoding the world
萤火虫昆虫昆虫类基因组GigaScience5.9932017华中农业大学PacBio RS II
Illumina HiSeq 2000		Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome
烟草温和绿色花叶病毒微生物病毒Plant disease3.8092017湖南农业大学PacBio RS II
BioNano IrysChip		Pumpkin: A New Natural Host of Tobacco mild green mosaic virus in China
肠杆菌属微生物细菌基因组Genome Announcements–2017湖南农业大学Complete Genome Sequence of Enterobacter sp. Strain ODB01, a Bacterium That Degrades Crude Oil
双歧杆菌微生物细菌三代基因组及二代宏基因组mBio6.7842017上海交大微生物代谢国重IlluminaGenomic Microdiversity of Bifidobacterium pseudocatenulatum Underlying Differential Strain-Level Responses to Dietary Carbohydrate Intervention
人类动物人类基因组、转录组Nature communications12.1212016.6暨南大学IlluminaLong-read sequencing and de novo assembly of a Chinese genome
棉花植物农作物二代转录组Plant Journal6.1412016华中师范大学Illumina HiSeq 2000The cotton β‐galactosyltransferase 1 (GalT1) that galactosylates arabinogalactan proteins participates in controlling fiber development
油菜植物农作物转录组Frontiers in Plant Science4.4022016华中科技大学Illumina HiSeq 2000  BGI
Illumina HiSeq 2500  Nextomics		Transcriptome Analysis of Stem and Globally Comparison with Other Tissues in Brassica napus
莲植物花卉线粒体Scientific Reports3.9982016武汉大学Illumina High-seq2500The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features
莲植物花卉高密度遗传图谱BMC Genomics3.5942016武汉农科院蔬菜所Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing
NextSV其他方法NextSVBMC Bioinformatics3.2422016希望组NextSVNextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
斑马鱼肠道微生物微生物细菌二代16SPLoS one2.742016华东师范大学Influence of endogenous and exogenous estrogenic endocrine on intestinal microbiota in zebrafish
冬虫夏草微生物其他微生物线粒体基因组Journal of Microbiological Methods1.7072016中科院北京微生物所Comparison of different sequencing and assembly strategies for a repeat-rich fungal genome, Ophiocordyceps sinensis
肉食杆菌微生物细菌基因组Genome Announcements–2016浙江万里大学Complete genome sequence of hemolysin-containing Carnobacterium sp. strain CP1 isolated from the Antarctic
稻纵卷叶螟颗粒病毒微生物病毒基因组PLoS one2.742016江苏里下河农业科学研究所PacBio RS IIGenome of Cnaphalocrocis medinalis granulovirus, the first Crambidae-infecting betabaculovirus isolated from rice leaffolder to sequenced
链霉菌微生物细菌基因组Journal of Biotechnology3.5032016湖南农大PacBio RS IIComplete genome sequence of the Streptomyces sp. strain CdTB01, a bacterium tolerant to cadmium
莲植物花卉线粒体Scientific Reports3.9982016武汉大学PacBio RS IIThe mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features
蓝藻微生物其他微生物基因组Standards in Genomic Sciences1.3392016东南大学PacBio RS IIComplete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing
杜仲植物药用植物叶绿体基因组Tree Genetics & Genomes2.0812016中国林科院，郑州PacBio RS IIComplete chloroplast genome sequences of Eucommia ulmoides: genome structure and evolution
莲数据库植物花卉Database–2015中科院武汉植物园LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study
苏云金芽孢杆菌微生物细菌基因组PLoS one2.742015湖南师范大学Illumina Hiseq 2000Comparative analysis of genomics and proteomics in Bacillus thuringiensis 4.0718
水稻植物农作物小RNAPLoS one2.742015中科院武汉植物园IlluminaGenome-wide dissection of the MicroRNA expression profile in rice embryo during early stages of seed germination
假单孢杆菌微生物细菌基因组Genome Announcements–2015浙江工业大学生物与环境工程学院Illumina HiSeq 2500Draft genome sequence of Pseudoalteromonas sp. strain R3, a red-pigmented L-amino acid oxidase-producing bacterium
肠道微生物微生物细菌肠道微生物Journal of Functional Foods3.7012015湖南中科院亚热带农业研究所Illumina MiSeq   16sDisturbance of the intestinal microbial community by ursolic acid contributes to its function as a regulator of fat deposition
红球菌微生物细菌基因组Genome Announcements–2015上海海洋大学渔业和生命科学学院SMRTComplete Genome Sequence of Rhodococcus sp. B7740, a Carotenoid-Producing Bacterium Isolated from the Arctic Sea
冬虫夏草微生物其他微生物线粒体Scientific Reports3.9982015中国农科院PacBio RS II测线粒体基因组
Illumina HiSeq 2500测转录组		Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis
肠道沙门氏菌微生物细菌PT修饰Scientific Reports3.9982014武汉大学药学院Illumina HiSeq 2000DNA phosphorothioate modifications influence the global transcriptional response and protect DNA from double-stranded breaks
莲植物花卉叶绿体BMC Plant Biology3.4972014武汉大学PacBio RS II和
Illumina Miseq比较		A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots
人类动物人类外显子测序#N/A2013武汉儿童医院SOLiD™ 4 System
Sanger		Exome sequencing identified NRG3 as a novel susceptible gene of Hirschsprung’s disease in a Chinese population
博落回植物药用植物转录组、蛋白组、代谢PLoS one2.742013湖南农大Illumina HiSeq2000Integration of transcriptome, proteome and metabolism data reveals the alkaloids biosynthesis in Macleaya cordata and Macleaya microcarpa
灵芝微生物真菌基因组PLoS one2.742012湖南农大Illumina Hiseq2000The genome of Ganderma lucidum provide insights into triterpense biosynthesis and wood degradation