代表性合作文章

截止2020年7月,希望组一共发表高水平SCI论文近200篇,总影响因子1000+,高居2020年自然指数中国测序行业第二名,其中包含Nature Genetics,Molecular Cell,Nature Microbiology,Nature Plants,Nature Communications,Molecular Plant等期刊。

发表年份研究对象发表期刊影响因子第一单位标题
2020草棉、亚洲棉、陆地棉Nature Genetics25.455武汉大学高等研究院Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
2020Streptomyces lividansNature Microbiology14.300武汉大学药学院SspABCD–SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities
2020芡实和金鱼藻Nature Plants13.297四川大学Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution
2020角苔Nature Plants13.297中国科学院植物研究所The hornwort genome and early land plant evolution
2020 Serratia marcescens SNB6Journal of Hazardous Materials7.650四川大学Insight into the mechanisms of plant growth promoting strain SNB6 on enhancing the phytoextraction in cadmium contaminated soil
2020马尾松毛虫Molecular Ecology Resources7.049中国林业科学研究院森林生态环境与保护研究所Chromosome-level genome assembly of an important pine defoliator, Dendrolimus punctatus (Lepidoptera; Lasiocampidae)
2020白粉虱Molecular Ecology Resources7.049中国农业科学院蔬菜花卉研究所Chromosome‐level genome assembly of the greenhouse whitefly (Trialeurodes vaporariorum Westwood)
2020黑尾近红鲌Molecular Ecology Resources7.049九江学院High‐quality genome assembly and transcriptome of
Ancherythroculter nigrocauda, an endemic Chinese cyprinid species  
2020油桐Genomics, Proteomics & Bioinformatics6.597中南林业科技大学非木质林木培育与保护重点实验室Tung Tree (Vernicia fordii) Genome Provides A Resource for Understanding Genome Evolution and Improved Oil Production
2020油菜Plant Journal5.726中国农业科学院油料作物研究所A global survey of the transcriptome of the allopolyploid Brassica napus based on single molecule long‐read isoform sequencing and Illumina‐based RNA‐seq data
2020人先天性运动眼球震颤Human Genetics 5.207中山大学Structural variations in a non‑coding region at 1q32.1 are responsible for the NYS7 locus in two large families
2020大肠杆菌Antimicrobial Agents and Chemotherapy4.715华南农业大学Co-occurrence of plasmid-mediated tigecycline and carbapenem resistance in Acinetobacter spp. from waterfowls and their neighboring environment.
2020胡桃GigaScience4.688中南林业科技大学Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
2020三疣梭子蟹GigaScience4.688江苏省盐碱地生物资源重点实验室Chromosome-level genome assembly reveals the unique genome evolution of the swimming crab (Portunus trituberculatus)
2020沉香木GigaScience4.688中国热带农业科学院热带生物技术研究所Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family
2020巨尾阿丽蝇GigaScience4.688中南大学基础医学院Chromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly.
2020新冠患者单细胞Cell Discovery 4.600第二军医大学国家肝癌研究中心Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing
2020硫杆菌-YNTRS-40Microorganisms4.167黑龙江八一农业大学Complete Genome Sequence of Acidithiobacillus ferrooxidans YNTRS-40, a Strain of the Ferrous Iron- and Sulfur-Oxidizing Acidophile
2020杉木Scientific Reports4.122浙江农林大学Genome survey of Chinese fir (Cunninghamia lanceolata): Identification of genomic SSRs and demonstration of their utility in genetic diversity analysis
2020多耐药铜绿假单胞菌Scientific Reports4.122哥斯达黎加大学High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers
2019西瓜Nature Genetics25.455北京市农林科学院Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits
2019花生Nature genetics25.455福建农林大学The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication
2019昆虫线粒体Molecular Biology and Evolution14.797浙江大学昆虫科学研究所Evolutionary Rate Correlation between Mitochondrial-Encoded and Mitochondria-Associated Nuclear-Encoded Proteins in Insects
2019大肠杆菌Nature Microbiology14.300华南农业大学兽医学院Plasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli
2019老鼠和鸭嘴兽TRPV1离子通道Nature Communications11.878昆明动物研究所Molecular basis for heat desensitization of TRPV1 ion channels
2019棉花Nature Communications11.878武汉大学生命科学学院Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton
2019DeepModNature Communications11.878费城儿童医院Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data
2019恒河猴Nature Communications11.878中国科学院昆明动物所Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants
2019苹果Nature Communications11.878中国农业科学院果树研究所A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour
2019糜子Nature Communications11.878中国农业大学Chromosome conformation capture resolved near complete genome assembly of broomcorn millet
2019人特发性震颤Brain11.814中南大学湘雅医院Expansion of GGC repeat in human-specific NOTCH2NLC gene is associated with Essential Tremor
2019狮子鱼Nature ecology & evolution10.965西北工业大学Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation
2019酵母Genome Research9.944美国俄亥俄州立大学Single-molecule long-read sequencing reveals the chromatin basis of gene expression
2019人神经核内包涵体疾病The American Journal of Human Genetics9.924中南大学湘雅医院Expansion of Human-Specific GGC Repeat in Neuronal Intranuclear Inclusion Disease-Related Disorders
2019赤点石斑鱼Molecular Ecology Resources7.049福建省水产科学研究所De Novo Assembly of a Chromosome-Level Reference Genome of Red Spotted Grouper (Epinephelus akaara) Using Nanopore Sequencing and Hi-C
2019.8大肠杆菌Emerging Microbes & Infections6.212华南农业大学兽医学院动物源菌耐药性国家风险评估实验室Emergence of mobile tigecycline resistance mechanism in Escherichia coli strains from migratory birds in China.
2019FSHDJournal of Medical Genetics5.899中国医学科学院北京协和医院神经内科Single-molecule optical mapping enables accurate molecular diagnosis of facioscapulohumeral muscular dystrophy (FSHD)
2019神经核内包涵体疾病Journal of Medical Genetics5.899北京大学第一医院神经内科Long-read sequencing identified repeat expansions in the 5′UTR of the NOTCH2NLC gene from Chinese patients with neuronal intranuclear inclusion disease
2019结构变异Journal of Medical Genetics5.899复旦大学附属妇产科医院Long-read sequencing and haplotype linkage analysis enabled preimplantation genetic testing for patients carrying pathogenic inversions
2019.8钩吻(断肠草)Acta Pharmaceutica Sinica B5.808湖南农业大学Whole-genome sequencing and analysis of the Chinese herbal plant Gelsemium elegans
2019空卵泡综合征Human Reproduction5.506湖南师范大学医学院基础医学部ZP1 mutations are associated with empty follicle syndrome: evidence for the existence of an intact oocyte and a zona pellucida in follicles up to the early antral stage. A case report
2019蝗虫RNA Biology5.477中国科学院北京生命科学研究院Long-read direct RNA sequencing by 5’-Cap capturing reveals the impact of Piwi on the widespread exonization of transposable elements in locusts
2019大肠杆菌Journal of Antimicrobial Chemotherapy5.113华南农业大学兽医学院动物源菌耐药性国家风险评估实验室Detection of chromosome-mediated tet(X4)-carrying Aeromonas caviae in a sewage sample from a chicken farm.
2019寄生蜂International Journal of Biological Macromolecules4.784浙江大学昆虫科学研究所Mitochondrial DNA and their nuclear copies in the parasitic wasp Pteromalus puparum: A comparative analysis in Chalcidoidea
2019碧凤蝶GigaScience4.688中国科学院昆明动物研究所Chromosomal-level reference genome of Chinese peacock butterfly (Papilio bianor)based
2019DeepSignalBioinformatics4.531中南大学DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning
2019NextPolishBioinformatics4.531未来组 (武汉希望组科技服务前身)NextPolish: a fast and efficient genome polishing tool for long read assembly.
2019黄芩International Journal of Molecular Sciences4.183青岛农业大学Hybrid Sequencing of Full-Length cDNA Transcripts of the Medicinal Plant Scutellaria baicalensis
2019大肠杆菌Microorganisms4.167华中农业大学Characteristics of a Colistin-Resistant Escherichia coli ST695 Harboring the Chromosomally-Encoded mcr-1 Gene
2019戊糖片球菌Frontiers in Microbiology4.019湖南师范大学A New Isolate of Pediococcus pentosaceus (SL001) with Antibacterial Activity Against Fish Pathogens and Potency in Facilitating the Immunity and Growth
2018小麦Nature 41.577中国科学院遗传与发育生物学研究所Genome sequence of the progenitor of wheat A subgenome Triticum urartu
2018玉米Nature Genetics25.455中国农业大学植物遗传育种系农业生物技术国家重点实验室Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes
2018Molecular cell 14.548广州医科大学附属第三医院生物医学研究中心N6-Methyladenine DNA Modification in the Human Genome
2018玉米Nature Communications11.878中国科学院遗传与发育生物学研究所A PECTIN METHYLESTERASE gene at the maize Ga1 locus confers male function in unilateral cross-incompatibility
2018菊花脑Molecular Plant10.812中国医学科学院中药研究所中药鉴定与安全性评价重点实验室The Chrysanthemum nankingense genome provides insights into the evolution and diversification of chrysanthemum flowers and medicinal traits
2018鼠乳杆菌Microbiome10.465上海交通大学生命科学与生物技术学院Predominant gut Lactobacillus murinus strain mediates anti-inflammaging effects in calorie-restricted mice
2018拟南芥Developmental Cell9.190新加坡国立大学和中国农业科学院生物技术研究所DNA N6-Adenine Methylationin Arabidopsis thaliana
2018石蛾GigaScience4.688中国农业大学植物保护学院The genome of an underwater architect, the caddisfly Stenopsyche tienmushanensis Hwang (Insecta: Trichoptera)
2018木棉GigaScience4.688云南曲靖师范学院De novo genome assembly of the red silk cotton tree (Bombax ceiba)
2018微囊藻Harmful Algae4.138中国科学院水生生物研究所淡水生态与生物技术国家重点实验室The highly heterogeneous methylated genomes and diverse restriction-modification systems of bloom-forming Microcystis
2018槿麻Scientific Reports4.122广西大学农业学院Complete sequence of kenaf (Hibiscus cannabinus) mitochondrial genome and comparative analysis with the mitochondrial genomes of other plants
2017水稻Nature communications11.878中科院遗传所Sequencing and de novo assembly of a near complete indica rice genome
2017三核苷酸重复Genome Medicine10.886哥伦比亚大学Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
2017杜仲Molecular Plant10.812中国林业科学研究院The hardy rubber tree genome provides insights into the evolution of polyisoprene biosynthesis
2017棉花New Phytologist7.299华中农业大学A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation
2017双歧杆菌mBio6.747上海交通大学Genomic Microdiversity of Bifidobacterium pseudocatenulatum Underlying Differential Strain-Level Responses to Dietary Carbohydrate Intervention
2017Plant Journal5.726武汉植物园The evolution of plant microRNAs: insights from a basal eudicot sacred lotus
2017HIFI-BarcodeGigaScience4.688中国农业大学植物保护学院Filling reference gaps via assembling DNA barcodes using high-throughput sequencing—moving toward barcoding the world
2017萤火虫GigaScience4.688华中农业大学Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome
2017水稻Scientific Reports4.122武汉大学Pedigree-based genome re-sequencing reveals genetic variation patterns of elite backbone varieties during modern rice improvement
2017 油桐叶绿体 Scientific Reports 4.122 中南林业科技大学 The complete chloroplast genome sequence of tung tree(Vernicia fordii):Organization and phylogenetic relationships with other angiosperms
2017矮牵牛Scientific Reports4.122华中农业大学Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genome
2017冬虫夏草线粒体Frontiers in microbiology4.019湖南农业大学SMRT sequencing revealed mitogenome characteristics and mitogenome-wide DNA modification pattern in Ophiocordyceps sinensis
2017蝶蛹金小蜂Developmental and Comparative Immunology3.119浙江大学昆虫科学研究所The genomic and transcriptomic analyses of serine proteases and their homologs in an endoparasitoid, Pteromalus puparum
2016人类Nature communications11.878暨南大学Long-read sequencing and de novo assembly of a Chinese genome
2016棉花Plant Journal5.726华中师范大学The cotton β‐galactosyltransferase 1 (GalT1) that galactosylates arabinogalactan proteins participates in controlling fiber development
2016Scientific Reports4.122武汉大学The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features
2015冬虫夏草Scientific Reports4.122中国农科院Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis
2014肠道沙门氏菌Scientific Reports4.122武汉大学药学院DNA phosphorothioate modifications influence the global transcriptional response and protect DNA from double-stranded breaks
2013博落回PLoS one2.766湖南农业大学Integration of transcriptome, proteome and metabolism data reveals the alkaloids biosynthesis in Macleaya cordata and Macleaya microcarpa
2012灵芝PLoS one2.766湖南农业大学The genome of Ganderma lucidum provide insights into triterpense biosynthesis and wood degradation